Wall clock time and date at job start Sun Mar 29 2020 21:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46804 * 179.97438 * 11 10 9 13 13 H 1.08996 * 110.66066 * 51.78664 * 12 11 10 14 14 C 1.54710 * 110.74565 * 174.99695 * 12 11 10 15 15 C 1.51644 * 101.92341 * 143.61058 * 14 12 11 16 16 C 1.37743 * 132.17995 * 164.60176 * 15 14 12 17 17 C 1.38348 * 119.98164 * 180.40358 * 16 15 14 18 18 C 1.38291 * 119.76756 * 359.93972 * 17 16 15 19 19 C 1.37934 * 120.34831 * 359.88176 * 18 17 16 20 20 C 1.38880 * 107.04083 * 344.62433 * 15 14 12 21 21 O 1.36142 * 111.23465 * 358.91802 * 20 15 14 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.08995 * 109.47224 * 300.00085 * 11 10 9 26 26 H 1.09001 * 109.47248 * 60.00362 * 11 10 9 27 27 H 1.08996 * 110.94415 * 261.76854 * 14 12 11 28 28 H 1.09000 * 110.93979 * 25.45479 * 14 12 11 29 29 H 1.08000 * 120.01015 * 0.35069 * 16 15 14 30 30 H 1.07999 * 120.12038 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.82732 * 179.85903 * 18 17 16 32 32 H 1.08004 * 119.87951 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.5649 -4.8754 -0.0153 12 6 2.6478 -5.9563 -0.0207 13 1 3.3662 -5.7849 0.7809 14 6 2.0177 -7.3641 0.0997 15 6 2.9235 -8.1902 -0.7927 16 6 3.1023 -9.5496 -0.9244 17 6 4.0231 -10.0411 -1.8325 18 6 4.7603 -9.1633 -2.6061 19 6 4.5803 -7.8017 -2.4785 20 6 3.6532 -7.2990 -1.5687 21 8 3.3068 -6.0107 -1.2973 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 0.9449 -4.9861 0.8743 26 1 0.9445 -4.9787 -0.9056 27 1 2.0545 -7.7206 1.1290 28 1 0.9942 -7.3661 -0.2754 29 1 2.5244 -10.2316 -0.3183 30 1 4.1654 -11.1065 -1.9372 31 1 5.4810 -9.5459 -3.3136 32 1 5.1604 -7.1230 -3.0862 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205611049.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:19 Heat of formation + Delta-G solvation = -79.167886 kcal Electronic energy + Delta-G solvation = -15522.857509 eV Core-core repulsion = 12833.844958 eV Total energy + Delta-G solvation = -2689.012551 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.13502 -38.90211 -38.05341 -35.00754 -33.88033 -31.52357 -30.94354 -29.37492 -26.73053 -24.49988 -23.45355 -22.74613 -22.47488 -18.74373 -18.58115 -17.84811 -17.51459 -16.90656 -16.36028 -16.27461 -16.05345 -15.08253 -14.80248 -14.45287 -14.09008 -13.96894 -13.75025 -13.38152 -13.07343 -12.91142 -12.72267 -12.62839 -12.45544 -12.13410 -11.74715 -11.65872 -11.31949 -10.95088 -10.33843 -9.83820 -9.11044 -8.35994 -6.48718 0.34163 0.42408 1.38336 1.40031 1.54926 2.25083 2.32165 2.73780 2.91688 2.97773 3.39735 3.71416 3.95698 3.99814 4.10362 4.20876 4.31542 4.41525 4.47357 4.57112 4.65895 4.76374 4.82157 4.87294 5.10658 5.13357 5.40769 5.48490 5.50656 5.55372 5.75649 5.90395 6.26051 6.45285 6.74556 7.23059 8.76638 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.057931 B = 0.004346 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.217266 B = 6440.599675 C = 6787.627076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.411 6.411 11 C 0.059 3.941 12 C 0.084 3.916 13 H 0.091 0.909 14 C -0.091 4.091 15 C -0.186 4.186 16 C -0.072 4.072 17 C -0.148 4.148 18 C -0.085 4.085 19 C -0.161 4.161 20 C 0.066 3.934 21 O -0.328 6.328 22 H 0.272 0.728 23 H -0.004 1.004 24 H -0.014 1.014 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 -20.772 -1.309 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.331 6.331 11 C -0.018 4.018 12 C 0.029 3.971 13 H 0.109 0.891 14 C -0.128 4.128 15 C -0.187 4.187 16 C -0.090 4.090 17 C -0.165 4.165 18 C -0.102 4.102 19 C -0.179 4.179 20 C 0.021 3.979 21 O -0.243 6.243 22 H 0.081 0.919 23 H 0.014 0.986 24 H 0.003 0.997 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.119 0.881 29 H 0.171 0.829 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.837 -20.421 -1.426 21.287 hybrid contribution -0.266 1.153 -0.029 1.184 sum 5.571 -19.268 -1.454 20.110 Atomic orbital electron populations 1.70066 1.07695 1.28739 1.50266 1.25967 0.96021 1.03370 0.93700 0.85110 0.78522 0.77133 0.78472 1.19071 1.19544 1.19222 1.21417 0.94071 0.90945 1.52664 0.92293 1.19896 0.88564 0.84368 0.93880 1.87850 1.35723 1.14279 1.95298 1.22666 0.94383 0.83323 1.01399 1.23457 0.94036 0.95460 0.84171 0.89119 1.21752 0.99246 0.89782 1.02027 1.21033 1.00274 0.95330 1.02082 1.20703 0.97870 0.92217 0.98196 1.21482 0.97079 1.01363 0.96623 1.21256 0.99222 0.90739 0.99003 1.20610 0.99089 0.97094 1.01130 1.20188 0.96023 0.83734 0.97929 1.86960 1.74235 1.25409 1.37705 0.91878 0.98580 0.99651 0.89743 0.93650 0.85893 0.88083 0.82932 0.82086 0.82286 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.99 45.28 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.55 -34.19 9.43 25.60 0.24 -33.95 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 9 C 0.21 12.10 5.69 71.24 0.41 12.50 16 10 O -0.41 -21.49 10.33 -148.98 -1.54 -23.02 16 11 C 0.06 2.31 5.61 71.98 0.40 2.71 16 12 C 0.08 2.82 3.91 31.18 0.12 2.94 16 13 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 14 C -0.09 -2.17 6.65 30.73 0.20 -1.97 16 15 C -0.19 -4.71 6.27 -19.53 -0.12 -4.83 16 16 C -0.07 -1.34 10.03 22.18 0.22 -1.11 16 17 C -0.15 -2.36 10.07 22.31 0.22 -2.14 16 18 C -0.08 -1.56 10.02 22.21 0.22 -1.34 16 19 C -0.16 -4.19 10.06 22.45 0.23 -3.97 16 20 C 0.07 2.08 7.04 22.68 0.16 2.24 16 21 O -0.33 -12.74 10.81 -95.17 -1.03 -13.76 16 22 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 23 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 24 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 25 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.10 2.21 7.92 -2.39 -0.02 2.19 16 29 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -73.56 280.64 3.61 -69.94 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.10 Total: 3.66 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 2.77 Total: -27.96 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -2.57 Total: -36.79 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.56 3.61 -69.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205611049.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.224 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds