Wall clock time and date at job start Sun Mar 29 2020 21:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47312 * 179.97438 * 11 10 9 13 13 C 1.42907 * 113.99738 * 180.02562 * 12 11 10 14 14 H 1.09004 * 110.43479 * 332.54038 * 13 12 11 15 15 C 1.54265 * 110.48368 * 210.00404 * 13 12 11 16 16 C 1.53872 * 106.59993 * 217.71158 * 15 13 12 17 17 C 1.54271 * 106.59697 * 0.02562 * 16 15 13 18 18 F 1.39900 * 110.48820 * 142.28404 * 17 16 15 19 19 F 1.39898 * 110.48591 * 264.93108 * 17 16 15 20 20 C 1.54884 * 110.48303 * 95.22985 * 13 12 11 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 23 23 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 24 24 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 25 25 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 26 26 H 1.09002 * 109.47128 * 300.00412 * 11 10 9 27 27 H 1.09006 * 109.46661 * 59.99854 * 11 10 9 28 28 H 1.09000 * 110.03186 * 337.00096 * 15 13 12 29 29 H 1.09002 * 110.03131 * 98.37771 * 15 13 12 30 30 H 1.09003 * 110.02964 * 119.28191 * 16 15 13 31 31 H 1.08999 * 110.03541 * 240.67036 * 16 15 13 32 32 H 1.09002 * 110.75522 * 274.92997 * 20 13 12 33 33 H 1.08994 * 110.75822 * 38.30744 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 8 2.4086 -6.0733 -0.0005 13 6 1.7939 -7.3634 -0.0005 14 1 0.8121 -7.3173 0.4709 15 6 2.6917 -8.3892 0.7215 16 6 2.5652 -9.7098 -0.0580 17 6 1.5953 -9.4402 -1.2271 18 9 2.0109 -10.1227 -2.3754 19 9 0.2928 -9.8133 -0.8787 20 6 1.6796 -7.9093 -1.4455 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5570 0.8898 23 1 0.6239 -2.5567 -0.8903 24 1 2.8717 -3.6044 -0.8905 25 1 2.8717 -3.6044 0.8894 26 1 0.8536 -5.0446 0.8903 27 1 0.8530 -5.0450 -0.8897 28 1 3.7273 -8.0492 0.7146 29 1 2.3511 -8.5265 1.7478 30 1 3.5394 -10.0107 -0.4434 31 1 2.1634 -10.4888 0.5898 32 1 0.7759 -7.5375 -1.9285 33 1 2.5643 -7.6506 -2.0273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:42 Heat of formation + Delta-G solvation = -193.957382 kcal Electronic energy + Delta-G solvation = -16309.534253 eV Core-core repulsion = 13197.147621 eV Total energy + Delta-G solvation = -3112.386632 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.117 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.94140 -48.08948 -39.79997 -36.99269 -35.59916 -33.38765 -29.97350 -29.03855 -27.68431 -24.83160 -22.34051 -22.19121 -21.62027 -18.91620 -18.49361 -18.00560 -17.38301 -16.98147 -16.50961 -16.45453 -15.73159 -15.27519 -15.00589 -14.56075 -14.41898 -14.32260 -14.10992 -13.69545 -13.31605 -13.24645 -12.78481 -12.63111 -12.57395 -12.34274 -12.13871 -11.89324 -11.60748 -11.55949 -11.45764 -11.20178 -10.56063 -10.53143 -8.20968 -6.32073 1.41414 1.44394 1.52421 2.37414 2.47043 2.79728 2.89598 3.12675 3.16578 3.48546 3.96095 4.07502 4.08998 4.20054 4.23369 4.28915 4.38412 4.59445 4.63016 4.82599 4.85352 4.92125 4.94785 5.10166 5.11481 5.18147 5.49669 5.70000 5.82754 6.17288 6.29720 6.83763 7.37283 8.90870 Molecular weight = 234.12amu Principal moments of inertia in cm(-1) A = 0.061485 B = 0.003859 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.282624 B = 7254.736337 C = 7361.639648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.097 4.097 11 C 0.071 3.929 12 O -0.384 6.384 13 C 0.076 3.924 14 H 0.080 0.920 15 C -0.116 4.116 16 C -0.147 4.147 17 C 0.275 3.725 18 F -0.205 7.205 19 F -0.204 7.204 20 C -0.184 4.184 21 H 0.264 0.736 22 H -0.003 1.003 23 H -0.004 1.004 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 -19.590 0.243 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.006 4.006 12 O -0.304 6.304 13 C 0.018 3.982 14 H 0.098 0.902 15 C -0.154 4.154 16 C -0.185 4.185 17 C 0.238 3.762 18 F -0.186 7.186 19 F -0.185 7.185 20 C -0.222 4.222 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.014 0.986 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.648 -19.487 0.226 20.035 hybrid contribution -0.448 0.879 -0.327 1.039 sum 4.200 -18.608 -0.100 19.076 Atomic orbital electron populations 1.70083 1.07781 1.27940 1.51480 1.25972 0.95785 1.03355 0.94578 0.85483 0.78273 0.77983 0.79222 1.20750 1.19110 1.19212 1.21637 0.93612 0.92269 1.50913 0.92162 1.18933 0.94287 0.92583 0.95290 1.21393 0.98587 0.92027 1.01428 1.22577 0.91735 0.86092 1.00149 1.87915 1.34008 1.13645 1.94808 1.23010 0.97741 0.83823 0.93654 0.90216 1.22203 1.01866 0.91416 0.99867 1.23109 1.00363 0.99910 0.95139 1.21987 0.79014 0.91126 0.84025 1.92989 1.90003 1.82291 1.53304 1.92997 1.40409 1.92919 1.92174 1.23948 1.05968 0.91701 1.00584 0.92679 0.98449 0.98581 0.92696 0.92492 0.92917 0.93417 0.89013 0.88518 0.86752 0.87169 0.89316 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.10 -4.05 5.52 30.59 0.17 -3.88 16 11 C 0.07 2.42 5.78 71.98 0.42 2.84 16 12 O -0.38 -11.59 10.05 -148.98 -1.50 -13.09 16 13 C 0.08 1.73 3.35 31.67 0.11 1.83 16 14 H 0.08 1.76 7.82 -2.39 -0.02 1.74 16 15 C -0.12 -1.92 6.56 31.32 0.21 -1.71 16 16 C -0.15 -2.09 6.41 31.32 0.20 -1.89 16 17 C 0.27 5.50 2.49 31.66 0.08 5.58 16 18 F -0.20 -4.60 17.16 44.97 0.77 -3.83 16 19 F -0.20 -4.66 17.17 44.97 0.77 -3.89 16 20 C -0.18 -3.98 6.20 31.88 0.20 -3.78 16 21 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 22 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 1.73 8.11 -2.39 -0.02 1.72 16 27 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.09 1.53 8.07 -2.39 -0.02 1.52 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.11 1.31 8.11 -2.39 -0.02 1.29 16 31 H 0.11 1.22 8.12 -2.39 -0.02 1.20 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -64.05 285.79 5.65 -58.40 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.08 Total: 2.55 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 2.22 Total: -29.99 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.28 Total: -56.31 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.50 Total: -13.09 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 1.54 Total: -7.72 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.05 5.65 -58.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.553 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds