Wall clock time and date at job start Sun Mar 29 2020 21:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86805 * 119.99876 * 2 1 4 4 H 1.48505 * 109.47042 * 269.99699 * 3 2 1 5 5 H 1.48494 * 109.47424 * 29.99992 * 3 2 1 6 6 H 1.48502 * 109.46917 * 150.00120 * 3 2 1 7 7 C 1.38633 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00244 * 180.02562 * 7 2 1 9 9 O 1.34929 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.42900 * 116.99962 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47129 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.68220 * 304.47738 * 11 10 9 13 13 C 1.53407 * 109.68392 * 183.91100 * 11 10 9 14 14 C 1.53072 * 108.30237 * 175.56716 * 13 11 10 15 15 C 1.50776 * 109.67962 * 48.19871 * 14 13 11 16 16 C 1.38505 * 118.76433 * 162.22021 * 15 14 13 17 17 C 1.38102 * 120.31442 * 179.83067 * 16 15 14 18 18 C 1.38293 * 119.98679 * 359.97438 * 17 16 15 19 19 C 1.37963 * 119.95245 * 0.06655 * 18 17 16 20 20 C 1.38367 * 121.40298 * 342.17499 * 15 14 13 21 21 O 1.35840 * 121.80688 * 0.51315 * 20 15 14 22 22 H 0.97005 * 119.99670 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47189 * 59.99691 * 10 9 7 24 24 H 1.09000 * 109.46723 * 299.99786 * 10 9 7 25 25 H 1.09004 * 109.69336 * 55.87012 * 13 11 10 26 26 H 1.09001 * 109.70525 * 295.27203 * 13 11 10 27 27 H 1.09002 * 109.43773 * 288.13625 * 14 13 11 28 28 H 1.08996 * 109.43777 * 168.26003 * 14 13 11 29 29 H 1.08003 * 119.84476 * 359.85264 * 16 15 14 30 30 H 1.08003 * 120.00857 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.02344 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.88931 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0017 11 6 1.1805 -4.7809 0.0021 12 1 0.4958 -4.7176 0.8478 13 6 2.0085 -6.0685 0.1019 14 6 1.0446 -7.2525 0.2120 15 6 -0.0214 -7.1397 -0.8483 16 6 -0.7614 -8.2650 -1.1718 17 6 -1.7480 -8.1970 -2.1357 18 6 -2.0013 -7.0011 -2.7825 19 6 -1.2668 -5.8773 -2.4650 20 6 -0.2703 -5.9426 -1.4959 21 8 0.4373 -4.8170 -1.2170 22 1 -0.4850 0.8401 -0.0004 23 1 2.7407 -3.5920 0.8921 24 1 2.7420 -3.5928 -0.8879 25 1 2.6442 -6.0288 0.9865 26 1 2.6255 -6.1787 -0.7899 27 1 0.5780 -7.2501 1.1971 28 1 1.5957 -8.1828 0.0746 29 1 -0.5661 -9.1999 -0.6677 30 1 -2.3223 -9.0774 -2.3838 31 1 -2.7730 -6.9472 -3.5361 32 1 -1.4651 -4.9440 -2.9710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:17 Heat of formation + Delta-G solvation = -54.957446 kcal Electronic energy + Delta-G solvation = -16006.757189 eV Core-core repulsion = 13318.794481 eV Total energy + Delta-G solvation = -2687.962707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38070 -37.47859 -35.94604 -34.13527 -31.89590 -30.70812 -29.96525 -27.17772 -24.51166 -23.48328 -22.32035 -22.03074 -19.64719 -17.60824 -17.42622 -16.34903 -15.72657 -15.06523 -14.49423 -14.33980 -14.07968 -13.78766 -13.70878 -13.18113 -13.02671 -12.72458 -12.30462 -11.78949 -11.51632 -11.33595 -11.19493 -10.94480 -10.72987 -10.38983 -10.23126 -9.97648 -9.58632 -9.16472 -8.63961 -7.95810 -7.85522 -5.92072 -3.56994 1.47141 1.64123 3.32907 3.34982 3.39197 3.64462 3.95324 4.29520 4.73059 4.82827 4.91193 5.02609 5.20199 5.29991 5.39578 5.43931 5.62277 5.68048 5.73625 5.79783 5.85794 6.00717 6.11732 6.21305 6.35769 6.49378 6.52127 6.58111 6.65541 6.67170 7.01581 7.48060 7.92870 8.44516 9.50184 10.16745 11.28684 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.042224 B = 0.005690 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.973683 B = 4919.870939 C = 5440.879264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.024 3.976 3 Si 0.926 3.074 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.364 4.364 8 H 0.063 0.937 9 O -0.288 6.288 10 C 0.080 3.920 11 C 0.099 3.901 12 H 0.076 0.924 13 C -0.152 4.152 14 C -0.074 4.074 15 C -0.171 4.171 16 C -0.087 4.087 17 C -0.166 4.166 18 C -0.089 4.089 19 C -0.151 4.151 20 C 0.145 3.855 21 O -0.292 6.292 22 H 0.258 0.742 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -16.006 -1.562 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.174 4.174 3 Si 0.753 3.247 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.443 4.443 8 H 0.081 0.919 9 O -0.203 6.203 10 C 0.002 3.998 11 C 0.043 3.957 12 H 0.094 0.906 13 C -0.190 4.190 14 C -0.111 4.111 15 C -0.171 4.171 16 C -0.105 4.105 17 C -0.184 4.184 18 C -0.107 4.107 19 C -0.169 4.169 20 C 0.099 3.901 21 O -0.205 6.205 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.032 -15.707 -1.655 15.794 hybrid contribution 0.714 0.646 0.132 0.972 sum 0.682 -15.061 -1.523 15.153 Atomic orbital electron populations 1.70042 1.05424 1.25885 1.51503 1.24961 0.95652 0.97728 0.99081 0.85964 0.78633 0.82040 0.78089 1.20671 1.20879 1.20045 1.20798 0.90180 0.82645 1.50720 0.91939 1.85700 1.31152 1.10142 1.93324 1.22098 0.92128 0.86529 0.99068 1.22584 0.93001 0.94607 0.85540 0.90578 1.22209 0.98500 0.94493 1.03808 1.20446 0.94627 0.98793 0.97208 1.19852 1.01461 0.93409 1.02422 1.20811 0.95367 0.97121 0.97203 1.20909 1.00257 0.98010 0.99206 1.20887 0.98620 0.92177 0.99058 1.20715 0.95908 0.99975 1.00339 1.18919 0.91061 0.85644 0.94478 1.86232 1.59757 1.34253 1.40213 0.93208 0.93740 0.94855 0.89643 0.90499 0.90558 0.90312 0.86317 0.86372 0.85780 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.47 13.67 55.48 0.76 -27.71 16 2 C 0.02 0.73 5.49 -17.51 -0.10 0.63 16 3 Si 0.93 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.36 -10.95 9.89 30.88 0.31 -10.65 16 8 H 0.06 1.75 7.77 -52.49 -0.41 1.34 16 9 O -0.29 -8.54 9.75 -21.01 -0.20 -8.75 16 10 C 0.08 1.79 5.70 37.16 0.21 2.00 16 11 C 0.10 1.91 3.08 -26.52 -0.08 1.82 16 12 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 13 C -0.15 -2.17 5.49 -26.48 -0.15 -2.31 16 14 C -0.07 -0.93 5.86 -27.81 -0.16 -1.10 16 15 C -0.17 -2.56 5.75 -104.44 -0.60 -3.16 16 16 C -0.09 -1.11 9.67 -39.53 -0.38 -1.49 16 17 C -0.17 -2.02 10.04 -39.61 -0.40 -2.42 16 18 C -0.09 -1.19 10.04 -39.66 -0.40 -1.58 16 19 C -0.15 -2.48 9.94 -39.34 -0.39 -2.87 16 20 C 0.15 2.62 6.47 -39.20 -0.25 2.37 16 21 O -0.29 -6.22 9.89 -23.74 -0.23 -6.46 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -34.78 276.92 -7.12 -41.89 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.19 Total: -1.73 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.39 Total: -18.76 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.76 Total: -27.71 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.44 Total: -15.20 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.78 -7.12 -41.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.066 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds