Wall clock time and date at job start Sun Mar 29 2020 21:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86805 * 119.99876 * 2 1 4 4 H 1.48505 * 109.47042 * 269.99699 * 3 2 1 5 5 H 1.48494 * 109.47424 * 29.99992 * 3 2 1 6 6 H 1.48502 * 109.46917 * 150.00120 * 3 2 1 7 7 C 1.38633 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00244 * 180.02562 * 7 2 1 9 9 O 1.34929 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.42900 * 116.99962 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47129 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.68220 * 304.47738 * 11 10 9 13 13 C 1.53407 * 109.68392 * 183.91100 * 11 10 9 14 14 C 1.53072 * 108.30237 * 175.56716 * 13 11 10 15 15 C 1.50776 * 109.67962 * 48.19871 * 14 13 11 16 16 C 1.38505 * 118.76433 * 162.22021 * 15 14 13 17 17 C 1.38102 * 120.31442 * 179.83067 * 16 15 14 18 18 C 1.38293 * 119.98679 * 359.97438 * 17 16 15 19 19 C 1.37963 * 119.95245 * 0.06655 * 18 17 16 20 20 C 1.38367 * 121.40298 * 342.17499 * 15 14 13 21 21 O 1.35840 * 121.80688 * 0.51315 * 20 15 14 22 22 H 0.97005 * 119.99670 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47189 * 59.99691 * 10 9 7 24 24 H 1.09000 * 109.46723 * 299.99786 * 10 9 7 25 25 H 1.09004 * 109.69336 * 55.87012 * 13 11 10 26 26 H 1.09001 * 109.70525 * 295.27203 * 13 11 10 27 27 H 1.09002 * 109.43773 * 288.13625 * 14 13 11 28 28 H 1.08996 * 109.43777 * 168.26003 * 14 13 11 29 29 H 1.08003 * 119.84476 * 359.85264 * 16 15 14 30 30 H 1.08003 * 120.00857 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.02344 * 180.02562 * 18 17 16 32 32 H 1.08005 * 119.88931 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5676 0.0017 11 6 1.1805 -4.7809 0.0021 12 1 0.4958 -4.7176 0.8478 13 6 2.0085 -6.0685 0.1019 14 6 1.0446 -7.2525 0.2120 15 6 -0.0214 -7.1397 -0.8483 16 6 -0.7614 -8.2650 -1.1718 17 6 -1.7480 -8.1970 -2.1357 18 6 -2.0013 -7.0011 -2.7825 19 6 -1.2668 -5.8773 -2.4650 20 6 -0.2703 -5.9426 -1.4959 21 8 0.4373 -4.8170 -1.2170 22 1 -0.4850 0.8401 -0.0004 23 1 2.7407 -3.5920 0.8921 24 1 2.7420 -3.5928 -0.8879 25 1 2.6442 -6.0288 0.9865 26 1 2.6255 -6.1787 -0.7899 27 1 0.5780 -7.2501 1.1971 28 1 1.5957 -8.1828 0.0746 29 1 -0.5661 -9.1999 -0.6677 30 1 -2.3223 -9.0774 -2.3838 31 1 -2.7730 -6.9472 -3.5361 32 1 -1.4651 -4.9440 -2.9710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:17 Heat of formation + Delta-G solvation = -77.932678 kcal Electronic energy + Delta-G solvation = -16007.753469 eV Core-core repulsion = 13318.794481 eV Total energy + Delta-G solvation = -2688.958988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.63722 -38.87834 -37.85883 -35.34212 -34.00746 -32.17837 -31.08600 -28.65152 -26.58396 -24.76875 -23.68658 -23.32651 -20.88992 -19.62644 -18.87446 -17.59499 -17.55874 -16.51011 -16.00422 -15.76792 -15.62841 -15.22826 -15.03902 -14.73419 -14.37312 -14.06481 -13.59738 -13.43718 -13.21921 -12.84013 -12.48800 -12.36198 -12.11496 -11.92502 -11.73698 -11.59059 -11.30429 -11.24723 -10.20627 -9.71398 -9.07064 -8.19893 -5.91608 0.38863 0.50405 1.37949 1.45909 1.55033 2.30781 2.32521 2.83263 3.13241 3.36641 3.68427 3.79363 3.86388 4.05614 4.21944 4.29808 4.35792 4.46054 4.54292 4.57066 4.66799 4.67694 4.81982 4.88365 5.04145 5.08726 5.17605 5.19562 5.42104 5.55156 5.59983 5.96238 6.17440 6.62175 7.21785 8.00941 9.05363 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.042224 B = 0.005690 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.973683 B = 4919.870939 C = 5440.879264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.011 2.989 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.384 4.384 8 H 0.077 0.923 9 O -0.336 6.336 10 C 0.073 3.927 11 C 0.097 3.903 12 H 0.058 0.942 13 C -0.140 4.140 14 C -0.071 4.071 15 C -0.177 4.177 16 C -0.084 4.084 17 C -0.155 4.155 18 C -0.089 4.089 19 C -0.181 4.181 20 C 0.099 3.901 21 O -0.337 6.337 22 H 0.261 0.739 23 H 0.067 0.933 24 H 0.031 0.969 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.205 -18.208 -1.154 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.237 4.237 3 Si 0.832 3.168 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.462 4.462 8 H 0.095 0.905 9 O -0.252 6.252 10 C -0.004 4.004 11 C 0.041 3.959 12 H 0.076 0.924 13 C -0.178 4.178 14 C -0.108 4.108 15 C -0.178 4.178 16 C -0.102 4.102 17 C -0.173 4.173 18 C -0.107 4.107 19 C -0.200 4.200 20 C 0.054 3.946 21 O -0.252 6.252 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.175 0.825 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.917 -17.951 -1.248 18.018 hybrid contribution 0.357 1.174 -0.047 1.228 sum 1.274 -16.777 -1.294 16.875 Atomic orbital electron populations 1.70239 1.07857 1.27299 1.53200 1.26350 0.96777 1.02324 0.98267 0.84691 0.77708 0.75735 0.78641 1.19670 1.20227 1.17783 1.21409 0.91053 0.83429 1.50358 0.90508 1.85635 1.33980 1.11951 1.93623 1.22429 0.92922 0.85317 0.99753 1.22563 0.92917 0.95715 0.84655 0.92361 1.22174 0.98387 0.92247 1.04984 1.20557 0.93950 0.99269 0.96988 1.20207 1.02314 0.92805 1.02445 1.21288 0.94387 0.97606 0.96880 1.21422 0.99620 0.98508 0.97730 1.21224 0.98352 0.91585 0.99494 1.20865 0.97245 1.00712 1.01166 1.19333 0.92444 0.86088 0.96693 1.86138 1.61211 1.36849 1.41009 0.93044 0.91501 0.95059 0.87003 0.90524 0.89384 0.86699 0.82463 0.82485 0.83149 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.86 13.67 21.61 0.30 -62.56 16 2 C -0.04 -2.72 5.49 84.82 0.47 -2.26 16 3 Si 1.01 46.40 29.55 68.60 2.03 48.43 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.38 -23.76 9.89 67.91 0.67 -23.08 16 8 H 0.08 4.34 7.77 -2.91 -0.02 4.32 16 9 O -0.34 -20.93 9.75 -77.69 -0.76 -21.69 16 10 C 0.07 3.39 5.70 71.98 0.41 3.80 16 11 C 0.10 3.92 3.08 30.73 0.09 4.01 16 12 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 13 C -0.14 -3.83 5.49 30.75 0.17 -3.66 16 14 C -0.07 -1.61 5.86 29.90 0.18 -1.43 16 15 C -0.18 -5.06 5.75 -19.75 -0.11 -5.17 16 16 C -0.08 -1.83 9.67 22.30 0.22 -1.62 16 17 C -0.15 -3.24 10.04 22.25 0.22 -3.02 16 18 C -0.09 -2.25 10.04 22.22 0.22 -2.03 16 19 C -0.18 -6.27 9.94 22.42 0.22 -6.05 16 20 C 0.10 3.73 6.47 22.52 0.15 3.87 16 21 O -0.34 -15.44 9.89 -87.46 -0.86 -16.30 16 22 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 23 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 24 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -80.78 276.92 4.70 -76.08 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 1.10 Total: 12.67 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 2.90 Total: -36.63 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: 0.30 Total: -62.56 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.62 Total: -37.99 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -80.78 4.70 -76.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.853 kcal (2) G-P(sol) polarization free energy of solvation -80.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds