Wall clock time and date at job start Sun Mar 29 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35665 * 117.00178 * 2 1 4 4 C 1.39085 * 119.88543 * 0.02562 * 3 2 1 5 5 C 1.36576 * 120.24793 * 180.02562 * 4 3 2 6 6 C 1.40052 * 120.00486 * 0.02562 * 5 4 3 7 7 C 1.46860 * 120.11350 * 179.97438 * 6 5 4 8 8 C 1.50696 * 119.99895 * 174.50870 * 7 6 5 9 9 O 1.21296 * 119.99826 * 354.51012 * 7 6 5 10 10 C 1.40034 * 119.77046 * 359.72773 * 6 5 4 11 11 C 1.37652 * 119.75938 * 0.52382 * 10 6 5 12 12 C 1.50696 * 120.00756 * 179.77952 * 11 10 6 13 13 C 1.50700 * 109.46891 * 264.72092 * 12 11 10 14 14 H 1.08005 * 120.00451 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00155 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00170 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46862 * 90.00073 * 17 15 13 19 19 H 1.48502 * 109.46893 * 209.99965 * 17 15 13 20 20 H 1.48500 * 109.46804 * 330.00250 * 17 15 13 21 21 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47378 * 300.00379 * 1 2 3 23 23 H 1.09000 * 109.46966 * 59.99822 * 1 2 3 24 24 H 1.08005 * 119.87888 * 0.02562 * 4 3 2 25 25 H 1.07997 * 120.00113 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47180 * 5.11368 * 8 7 6 27 27 H 1.09000 * 109.46671 * 125.10687 * 8 7 6 28 28 H 1.08995 * 109.47338 * 245.10416 * 8 7 6 29 29 H 1.07997 * 120.12266 * 180.27683 * 10 6 5 30 30 H 1.09000 * 109.47566 * 144.72382 * 12 11 10 31 31 H 1.08999 * 109.47442 * 24.71553 * 12 11 10 32 32 H 0.96995 * 120.00013 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2851 2.3737 0.0005 5 6 1.8975 3.5945 0.0000 6 6 3.2956 3.6767 -0.0016 7 6 3.9566 4.9882 -0.0027 8 6 5.4559 5.0764 0.1204 9 8 3.2956 6.0003 -0.1028 10 6 4.0611 2.5041 0.0031 11 6 3.4339 1.2788 -0.0017 12 6 4.2522 0.0133 -0.0017 13 6 4.4199 -0.4763 -1.4170 14 1 3.9778 0.0735 -2.2347 15 6 5.1378 -1.6264 -1.6681 16 7 5.6759 -2.2963 -0.6724 17 14 5.3451 -2.2338 -3.4225 18 1 6.5707 -1.6369 -4.0114 19 1 5.4660 -3.7139 -3.4228 20 1 4.1634 -1.8334 -4.2277 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2068 2.3128 0.0014 25 1 1.3036 4.4965 0.0009 26 1 5.8811 4.0728 0.1081 27 1 5.8558 5.6506 -0.7153 28 1 5.7151 5.5695 1.0572 29 1 5.1395 2.5609 0.0064 30 1 3.7431 -0.7487 0.5885 31 1 5.2320 0.2142 0.4317 32 1 6.1812 -3.1052 -0.8491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:36 Heat of formation + Delta-G solvation = -59.193899 kcal Electronic energy + Delta-G solvation = -15971.069332 eV Core-core repulsion = 13282.922919 eV Total energy + Delta-G solvation = -2688.146414 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.01761 -38.82250 -36.66950 -33.51222 -31.51822 -31.24704 -28.63335 -27.43678 -26.76797 -23.35642 -22.83207 -20.95328 -19.06015 -17.60654 -16.34370 -16.04725 -15.95450 -15.28921 -14.68736 -14.59402 -14.38340 -14.18578 -13.20418 -12.77665 -12.60943 -12.35130 -12.09804 -11.99838 -11.74355 -11.46824 -11.17331 -10.95643 -10.68419 -10.55108 -10.44919 -9.64619 -9.49627 -9.37581 -8.40310 -8.38245 -7.57325 -6.02152 -4.04812 1.11766 1.88502 2.78852 3.30665 3.37066 3.41350 3.71664 4.24874 4.40617 4.48001 5.11282 5.16278 5.26131 5.33593 5.36733 5.39845 5.52306 5.55306 5.70202 5.72408 5.92429 6.05417 6.14707 6.51221 6.65093 6.75845 6.83019 7.16905 7.56028 7.71080 7.81409 7.89186 7.93676 8.33155 8.98579 9.57964 11.07892 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.008036 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.839053 B = 3483.429118 C = 4372.942812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.288 6.288 3 C 0.161 3.839 4 C -0.229 4.229 5 C -0.043 4.043 6 C -0.222 4.222 7 C 0.404 3.596 8 C -0.204 4.204 9 O -0.483 6.483 10 C -0.041 4.041 11 C -0.082 4.082 12 C 0.058 3.942 13 C -0.505 4.505 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.097 0.903 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 8.137 2.476 10.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.199 6.199 3 C 0.115 3.885 4 C -0.248 4.248 5 C -0.061 4.061 6 C -0.224 4.224 7 C 0.286 3.714 8 C -0.261 4.261 9 O -0.362 6.362 10 C -0.059 4.059 11 C -0.083 4.083 12 C 0.021 3.979 13 C -0.543 4.543 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.115 0.885 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.155 0.845 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.032 8.288 2.464 10.543 hybrid contribution -0.136 -0.410 -1.010 1.099 sum -6.168 7.878 1.453 10.110 Atomic orbital electron populations 1.23047 0.79658 1.03666 1.00695 1.86264 1.20057 1.26515 1.87091 1.19349 0.92356 0.83854 0.92990 1.20869 0.99764 0.92403 1.11763 1.20646 0.93491 0.97019 0.94961 1.20279 0.94356 0.94505 1.13216 1.22340 0.91277 0.87661 0.70162 1.22247 0.94519 1.05106 1.04208 1.90477 1.68484 1.38501 1.38709 1.21297 0.99855 0.90071 0.94689 1.20117 0.90757 0.98052 0.99371 1.18202 0.93640 0.88035 0.98006 1.21004 1.32777 1.08766 0.91781 0.92731 1.24968 0.95689 0.96510 0.97040 1.69951 1.35246 1.17472 1.30713 0.86576 0.78503 0.77909 0.84939 1.20630 1.21186 1.19916 0.88455 0.93155 0.92982 0.85728 0.85775 0.89316 0.89287 0.89099 0.84518 0.94588 0.95283 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.80 101.05 0.99 1.32 16 2 O -0.29 -5.62 9.61 -18.70 -0.18 -5.80 16 3 C 0.16 3.15 6.67 -38.96 -0.26 2.89 16 4 C -0.23 -3.78 8.96 -39.87 -0.36 -4.13 16 5 C -0.04 -0.71 9.54 -39.50 -0.38 -1.09 16 6 C -0.22 -3.79 5.87 -105.06 -0.62 -4.40 16 7 C 0.40 6.33 7.21 -30.82 -0.22 6.11 16 8 C -0.20 -2.42 10.19 36.00 0.37 -2.05 16 9 O -0.48 -8.68 17.10 5.54 0.09 -8.59 16 10 C -0.04 -0.75 9.07 -39.12 -0.35 -1.11 16 11 C -0.08 -1.75 5.08 -104.53 -0.53 -2.28 16 12 C 0.06 1.46 4.82 -29.04 -0.14 1.32 16 13 C -0.50 -13.97 9.09 -34.44 -0.31 -14.29 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 23 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 24 H 0.12 1.67 6.27 -52.48 -0.33 1.34 16 25 H 0.12 1.88 7.65 -52.49 -0.40 1.48 16 26 H 0.09 1.00 5.61 -51.93 -0.29 0.71 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.14 2.25 5.94 -52.49 -0.31 1.94 16 30 H 0.04 0.98 7.69 -51.93 -0.40 0.58 16 31 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 279.60 15.07 4.21 4.21 Total: -1.00 -31.73 279.60 -5.82 -37.55 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -3.75 Total: -2.24 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.91 Total: -16.15 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.41 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.08 Total: -14.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.73 -5.82 -37.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.647 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds