Wall clock time and date at job start Sun Mar 29 2020 21:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35665 * 117.00178 * 2 1 4 4 C 1.39085 * 119.88543 * 0.02562 * 3 2 1 5 5 C 1.36576 * 120.24793 * 180.02562 * 4 3 2 6 6 C 1.40052 * 120.00486 * 0.02562 * 5 4 3 7 7 C 1.46860 * 120.11350 * 179.97438 * 6 5 4 8 8 C 1.50696 * 119.99895 * 174.50870 * 7 6 5 9 9 O 1.21296 * 119.99826 * 354.51012 * 7 6 5 10 10 C 1.40034 * 119.77046 * 359.72773 * 6 5 4 11 11 C 1.37652 * 119.75938 * 0.52382 * 10 6 5 12 12 C 1.50696 * 120.00756 * 179.77952 * 11 10 6 13 13 C 1.50700 * 109.46891 * 264.72092 * 12 11 10 14 14 H 1.08005 * 120.00451 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00155 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00170 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46862 * 90.00073 * 17 15 13 19 19 H 1.48502 * 109.46893 * 209.99965 * 17 15 13 20 20 H 1.48500 * 109.46804 * 330.00250 * 17 15 13 21 21 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47378 * 300.00379 * 1 2 3 23 23 H 1.09000 * 109.46966 * 59.99822 * 1 2 3 24 24 H 1.08005 * 119.87888 * 0.02562 * 4 3 2 25 25 H 1.07997 * 120.00113 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.47180 * 5.11368 * 8 7 6 27 27 H 1.09000 * 109.46671 * 125.10687 * 8 7 6 28 28 H 1.08995 * 109.47338 * 245.10416 * 8 7 6 29 29 H 1.07997 * 120.12266 * 180.27683 * 10 6 5 30 30 H 1.09000 * 109.47566 * 144.72382 * 12 11 10 31 31 H 1.08999 * 109.47442 * 24.71553 * 12 11 10 32 32 H 0.96995 * 120.00013 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2851 2.3737 0.0005 5 6 1.8975 3.5945 0.0000 6 6 3.2956 3.6767 -0.0016 7 6 3.9566 4.9882 -0.0027 8 6 5.4559 5.0764 0.1204 9 8 3.2956 6.0003 -0.1028 10 6 4.0611 2.5041 0.0031 11 6 3.4339 1.2788 -0.0017 12 6 4.2522 0.0133 -0.0017 13 6 4.4199 -0.4763 -1.4170 14 1 3.9778 0.0735 -2.2347 15 6 5.1378 -1.6264 -1.6681 16 7 5.6759 -2.2963 -0.6724 17 14 5.3451 -2.2338 -3.4225 18 1 6.5707 -1.6369 -4.0114 19 1 5.4660 -3.7139 -3.4228 20 1 4.1634 -1.8334 -4.2277 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2068 2.3128 0.0014 25 1 1.3036 4.4965 0.0009 26 1 5.8811 4.0728 0.1081 27 1 5.8558 5.6506 -0.7153 28 1 5.7151 5.5695 1.0572 29 1 5.1395 2.5609 0.0064 30 1 3.7431 -0.7487 0.5885 31 1 5.2320 0.2142 0.4317 32 1 6.1812 -3.1052 -0.8491 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:35 Heat of formation + Delta-G solvation = -78.412056 kcal Electronic energy + Delta-G solvation = -15971.902694 eV Core-core repulsion = 13282.922919 eV Total energy + Delta-G solvation = -2688.979776 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.38541 -40.12530 -38.05355 -35.45689 -33.22450 -32.54580 -29.79020 -29.10281 -28.11071 -25.24739 -24.16333 -22.42703 -20.40458 -18.98307 -18.44285 -17.39351 -17.30146 -16.59495 -16.48773 -15.87050 -15.61075 -15.52540 -14.60308 -14.44635 -14.21117 -13.80657 -13.46110 -13.21790 -13.02254 -12.94597 -12.73153 -12.56844 -12.44964 -12.18533 -11.93011 -11.54052 -11.28870 -10.71563 -10.54430 -9.83288 -9.05831 -8.14998 -6.26394 -0.22302 0.47507 1.40638 1.41525 1.48480 1.53082 2.42453 2.47314 2.88840 3.15784 3.23932 3.81651 3.86850 4.18986 4.26031 4.33402 4.41323 4.46524 4.60108 4.68214 4.71899 4.83366 5.00317 5.08578 5.20310 5.33087 5.40268 5.42852 5.71530 5.79449 5.89249 6.22186 6.55646 6.58703 6.84397 7.40623 8.94236 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.008036 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.839053 B = 3483.429118 C = 4372.942812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.150 3.850 4 C -0.218 4.218 5 C -0.041 4.041 6 C -0.228 4.228 7 C 0.407 3.593 8 C -0.200 4.200 9 O -0.507 6.507 10 C -0.035 4.035 11 C -0.122 4.122 12 C 0.071 3.929 13 C -0.518 4.518 14 H 0.049 0.951 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.959 3.041 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.270 1.270 21 H 0.112 0.888 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.159 0.841 25 H 0.143 0.857 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.002 0.998 31 H 0.011 0.989 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 9.442 1.658 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.103 3.897 4 C -0.236 4.236 5 C -0.059 4.059 6 C -0.229 4.229 7 C 0.290 3.710 8 C -0.256 4.256 9 O -0.387 6.387 10 C -0.053 4.053 11 C -0.123 4.123 12 C 0.034 3.966 13 C -0.556 4.556 14 H 0.067 0.933 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.784 3.216 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.195 1.195 21 H 0.130 0.870 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.177 0.823 25 H 0.161 0.839 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.130 0.870 29 H 0.166 0.834 30 H 0.020 0.980 31 H 0.029 0.971 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.773 9.598 1.648 11.862 hybrid contribution 0.011 -0.784 -0.705 1.054 sum -6.761 8.815 0.943 11.149 Atomic orbital electron populations 1.23402 0.76699 1.05396 1.02488 1.86209 1.23324 1.27119 1.87192 1.19485 0.92045 0.84973 0.93190 1.21123 1.01284 0.91055 1.10182 1.20995 0.93615 0.97754 0.93506 1.20523 0.94839 0.94810 1.12770 1.22678 0.92847 0.86454 0.68988 1.22272 0.91464 1.05927 1.05937 1.90474 1.69373 1.38868 1.40012 1.21365 1.00625 0.89551 0.93801 1.19905 0.91755 0.97198 1.03404 1.17850 0.93014 0.89434 0.96267 1.21298 1.32512 1.08982 0.92794 0.93297 1.25825 0.95353 0.96693 1.01255 1.70071 1.36033 1.17977 1.32910 0.85539 0.78768 0.77452 0.79849 1.19491 1.20646 1.19472 0.87008 0.90858 0.91474 0.82310 0.83892 0.88988 0.87707 0.86980 0.83383 0.97962 0.97076 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 9.80 113.37 1.11 1.47 16 2 O -0.33 -12.79 9.61 -89.82 -0.86 -13.66 16 3 C 0.15 5.83 6.67 22.67 0.15 5.99 16 4 C -0.22 -6.73 8.96 22.08 0.20 -6.53 16 5 C -0.04 -1.25 9.54 22.32 0.21 -1.04 16 6 C -0.23 -7.43 5.87 -20.15 -0.12 -7.54 16 7 C 0.41 11.91 7.21 27.94 0.20 12.11 16 8 C -0.20 -4.23 10.19 71.23 0.73 -3.50 16 9 O -0.51 -17.15 17.10 -3.08 -0.05 -17.20 16 10 C -0.04 -1.29 9.07 22.57 0.20 -1.08 16 11 C -0.12 -5.29 5.08 -19.80 -0.10 -5.39 16 12 C 0.07 3.77 4.82 29.10 0.14 3.91 16 13 C -0.52 -29.40 9.09 25.60 0.23 -29.17 16 14 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -55.65 13.29 21.45 0.28 -55.37 16 17 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 22 H 0.07 1.47 7.65 -2.39 -0.02 1.45 16 23 H 0.07 1.46 7.65 -2.39 -0.02 1.44 16 24 H 0.16 3.70 6.27 -2.91 -0.02 3.68 16 25 H 0.14 3.89 7.65 -2.91 -0.02 3.87 16 26 H 0.09 1.90 5.61 -2.39 -0.01 1.88 16 27 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.15 4.85 5.94 -2.91 -0.02 4.83 16 30 H 0.00 0.12 7.69 -2.39 -0.02 0.10 16 31 H 0.01 0.60 8.05 -2.39 -0.02 0.58 16 32 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -69.57 279.60 5.94 -63.63 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.12 Total: 6.31 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.42 Total: -29.94 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.92 Total: -30.86 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.57 5.94 -63.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.787 kcal (2) G-P(sol) polarization free energy of solvation -69.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds