Wall clock time and date at job start Sun Mar 29 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00024 * 2 1 4 4 H 1.48497 * 109.47273 * 270.00371 * 3 2 1 5 5 H 1.48500 * 109.46874 * 30.00609 * 3 2 1 6 6 H 1.48497 * 109.46812 * 150.00343 * 3 2 1 7 7 C 1.37875 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00116 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99983 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.38058 * 120.41860 * 89.99920 * 11 10 9 13 13 N 1.31938 * 121.19378 * 179.79460 * 12 11 10 14 14 C 1.32415 * 121.81497 * 0.23833 * 13 12 11 15 15 C 1.39412 * 119.96188 * 359.91874 * 14 13 12 16 16 C 1.38662 * 119.63335 * 0.17227 * 15 14 13 17 17 N 1.40243 * 120.01834 * 180.27650 * 15 14 13 18 18 C 1.47337 * 117.63681 * 346.39837 * 17 15 14 19 19 C 1.53538 * 107.53002 * 41.73386 * 18 17 15 20 20 O 1.35824 * 119.52238 * 179.75829 * 14 13 12 21 21 H 0.96999 * 119.99933 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47404 * 60.00072 * 9 7 2 23 23 H 1.09001 * 109.46801 * 299.99887 * 9 7 2 24 24 H 1.09003 * 109.47391 * 60.00108 * 10 9 7 25 25 H 1.09001 * 109.47224 * 299.99630 * 10 9 7 26 26 H 1.08002 * 119.40682 * 0.07958 * 12 11 10 27 27 H 1.08007 * 120.88068 * 179.87081 * 16 15 14 28 28 H 0.97003 * 121.17779 * 166.43129 * 17 15 14 29 29 H 1.08996 * 109.85064 * 282.22387 * 18 17 15 30 30 H 1.09000 * 109.90057 * 161.26546 * 18 17 15 31 31 H 1.09007 * 109.57043 * 181.99701 * 19 18 17 32 32 H 1.09000 * 109.57322 * 61.62966 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 6 6.2285 -2.6362 1.1878 13 7 7.5478 -2.6402 1.2046 14 6 8.2601 -2.6402 0.0883 15 6 7.6165 -2.6376 -1.1483 16 6 6.2309 -2.6313 -1.2001 17 7 8.3698 -2.6434 -2.3313 18 6 9.8088 -2.3452 -2.2267 19 6 10.3444 -3.0789 -0.9889 20 8 9.6165 -2.6395 0.1599 21 1 -0.4850 0.8400 0.0004 22 1 3.8753 -0.6805 0.8888 23 1 3.8745 -0.6801 -0.8912 24 1 3.6578 -3.1506 -0.8907 25 1 3.6585 -3.1502 0.8893 26 1 5.6864 -2.6371 2.1219 27 1 5.7115 -2.6270 -2.1471 28 1 7.9578 -2.8365 -3.1880 29 1 9.9570 -1.2713 -2.1132 30 1 10.3266 -2.6978 -3.1187 31 1 11.4027 -2.8520 -0.8593 32 1 10.2125 -4.1534 -1.1158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:23 Heat of formation + Delta-G solvation = -26.423256 kcal Electronic energy + Delta-G solvation = -15859.775832 eV Core-core repulsion = 13205.343211 eV Total energy + Delta-G solvation = -2654.432621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.96292 -39.43624 -36.59816 -36.05253 -34.20773 -32.39561 -31.23129 -28.51411 -27.11194 -24.92933 -24.53198 -22.71803 -21.15984 -19.26811 -19.01294 -18.60292 -17.69106 -16.67759 -16.34362 -16.06301 -15.63153 -15.25988 -14.85844 -14.68968 -14.60433 -14.38881 -13.95950 -13.61488 -13.04994 -12.84257 -12.50471 -12.25949 -11.87640 -11.75469 -11.65619 -11.53170 -11.35355 -10.75369 -10.41110 -9.76546 -8.46158 -8.28288 -6.31453 0.24819 0.36106 1.34465 1.37602 1.49353 1.92843 2.31163 2.36283 2.83016 3.07501 3.47151 3.74068 3.94370 4.04770 4.13188 4.18388 4.22825 4.35203 4.63524 4.70679 4.77448 4.81221 4.85796 5.01904 5.26108 5.42388 5.51582 5.62152 5.68088 5.82085 6.25497 6.29729 6.69255 6.76590 7.11760 7.33269 8.88307 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.005557 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.749143 B = 5037.120569 C = 5165.967080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.528 4.528 8 H 0.040 0.960 9 C -0.002 4.002 10 C -0.051 4.051 11 C -0.108 4.108 12 C 0.071 3.929 13 N -0.493 5.493 14 C 0.234 3.766 15 C 0.105 3.895 16 C -0.124 4.124 17 N -0.745 5.745 18 C 0.084 3.916 19 C 0.040 3.960 20 O -0.327 6.327 21 H 0.266 0.734 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.168 0.832 27 H 0.152 0.848 28 H 0.418 0.582 29 H 0.067 0.933 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.457 -5.652 -6.778 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.058 0.942 9 C -0.039 4.039 10 C -0.089 4.089 11 C -0.111 4.111 12 C -0.087 4.087 13 N -0.212 5.212 14 C 0.051 3.949 15 C 0.000 4.000 16 C -0.154 4.154 17 N -0.382 5.382 18 C -0.040 4.040 19 C -0.036 4.036 20 O -0.237 6.237 21 H 0.075 0.925 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.185 0.815 27 H 0.170 0.830 28 H 0.256 0.744 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.170 0.830 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.121 -5.457 -5.838 24.463 hybrid contribution -1.002 0.634 -1.104 1.620 sum 22.119 -4.823 -6.942 23.679 Atomic orbital electron populations 1.70053 1.08112 1.28062 1.52809 1.25899 0.95488 1.03109 0.94295 0.85761 0.79419 0.78979 0.79143 1.19173 1.20876 1.17734 1.21485 0.91797 0.93328 1.50016 0.94161 1.19468 0.93821 0.94225 0.96407 1.20299 0.88121 0.97762 1.02745 1.20898 0.97480 0.99158 0.93559 1.22345 0.87131 1.00447 0.98734 1.66716 1.08913 1.15455 1.30088 1.19109 0.84740 1.03082 0.87987 1.18603 0.91980 1.01457 0.88000 1.21069 0.91181 1.03642 0.99501 1.44679 1.08213 1.79692 1.05591 1.22492 0.80587 1.00291 1.00631 1.23755 0.97222 0.99128 0.83522 1.85883 1.13405 1.82174 1.42245 0.92500 0.96571 0.96659 0.91152 0.91040 0.81504 0.83048 0.74361 0.91455 0.84368 0.82996 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.53 5.47 84.65 0.46 0.99 16 3 Si 0.94 45.03 27.47 68.60 1.88 46.92 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 7 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 9 C 0.00 -0.08 4.02 29.85 0.12 0.04 16 10 C -0.05 -1.96 5.31 29.85 0.16 -1.81 16 11 C -0.11 -3.71 5.15 -19.76 -0.10 -3.81 16 12 C 0.07 2.45 10.83 84.63 0.92 3.37 16 13 N -0.49 -17.88 10.38 -308.17 -3.20 -21.08 16 14 C 0.23 7.58 7.58 84.89 0.64 8.23 16 15 C 0.10 2.93 6.51 38.18 0.25 3.18 16 16 C -0.12 -3.73 9.76 22.52 0.22 -3.51 16 17 N -0.75 -13.86 5.93 -335.99 -1.99 -15.86 16 18 C 0.08 1.05 7.37 86.40 0.64 1.68 16 19 C 0.04 0.60 7.17 72.16 0.52 1.11 16 20 O -0.33 -9.13 10.41 -91.57 -0.95 -10.08 16 21 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 22 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 23 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 24 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 25 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 26 H 0.17 5.30 8.06 -2.91 -0.02 5.28 16 27 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.42 5.84 8.91 -92.71 -0.83 5.01 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.15 1.17 8.14 -2.38 -0.02 1.16 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.40 272.59 0.35 -73.05 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.25 Total: 6.87 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.07 Total: -20.54 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -4.89 Total: -96.22 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.95 Total: -10.08 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -73.40 0.35 -73.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.625 kcal (2) G-P(sol) polarization free energy of solvation -73.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds