Wall clock time and date at job start Sun Mar 29 2020 21:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47817 * 2 1 4 4 C 1.47199 * 109.47322 * 120.00368 * 2 1 3 5 5 N 2.60798 * 109.47124 * 120.00212 * 2 1 3 6 6 C 1.50706 * 109.47114 * 240.00198 * 2 1 3 7 7 O 1.21311 * 119.99665 * 240.00483 * 6 2 1 8 8 N 1.34768 * 120.00008 * 60.00170 * 6 2 1 9 9 C 1.40598 * 119.99945 * 180.02562 * 8 6 2 10 10 C 1.40655 * 126.08235 * 0.02740 * 9 8 6 11 11 N 1.30901 * 108.39020 * 179.73760 * 10 9 8 12 12 N 1.40072 * 108.40394 * 359.97438 * 11 10 9 13 13 C 1.37326 * 126.06741 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00334 * 179.97438 * 13 12 11 15 15 C 1.38988 * 120.00010 * 359.97438 * 13 12 11 16 16 N 1.31289 * 119.99942 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99913 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47194 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46943 * 120.00302 * 17 15 13 20 20 H 1.48494 * 109.46846 * 240.00178 * 17 15 13 21 21 C 1.35682 * 126.08314 * 179.71162 * 9 8 6 22 22 H 1.08999 * 109.47816 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47249 * 299.99926 * 1 2 3 24 24 H 1.09007 * 109.46638 * 59.99973 * 1 2 3 25 25 H 0.96997 * 120.00261 * 359.97438 * 8 6 2 26 26 H 1.08001 * 125.80435 * 359.69530 * 10 9 8 27 27 H 0.97005 * 119.99703 * 179.97438 * 16 15 13 28 28 H 1.07993 * 126.24427 * 0.24617 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6940 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0323 -0.7104 -1.2305 7 8 2.7296 -1.6968 -1.1192 8 7 1.7067 -0.2499 -2.4546 9 6 2.1750 -0.9130 -3.6025 10 6 2.9860 -2.0620 -3.6227 11 7 3.2094 -2.3880 -4.8706 12 7 2.5521 -1.4644 -5.6934 13 6 2.5461 -1.4660 -7.0666 14 1 2.0035 -0.7031 -7.6052 15 6 3.2384 -2.4493 -7.7635 16 7 3.8976 -3.3769 -7.1089 17 14 3.2296 -2.4518 -9.6316 18 1 2.4188 -1.3094 -10.1243 19 1 4.6213 -2.3232 -10.1333 20 1 2.6422 -3.7243 -10.1220 21 6 1.9199 -0.5618 -4.8881 22 1 -0.3635 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 1.1488 0.5385 -2.5436 26 1 3.3613 -2.5857 -2.7559 27 1 4.3805 -4.0634 -7.5953 28 1 1.3247 0.2781 -5.2145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318856938.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:09 Heat of formation + Delta-G solvation = 47.432483 kcal Electronic energy + Delta-G solvation = -15421.070314 eV Core-core repulsion = 12666.299975 eV Total energy + Delta-G solvation = -2754.770339 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.74845 -40.50059 -37.65878 -35.93688 -35.11854 -33.98365 -32.15856 -29.51973 -26.91639 -25.94856 -23.06775 -22.46896 -21.16674 -19.34146 -18.91588 -17.85527 -17.36842 -16.69358 -16.39696 -15.71263 -15.36397 -15.11540 -14.80278 -14.68279 -14.09221 -13.70220 -13.46268 -13.29695 -13.10945 -12.92448 -12.78840 -12.70890 -12.33418 -12.00662 -11.84390 -11.00677 -10.79107 -10.65947 -10.06939 -8.49012 -8.43815 -6.20941 1.22588 1.41117 1.46971 1.49997 1.61272 1.74093 1.90023 2.12763 2.43669 2.55538 2.84744 2.97055 3.13109 3.87027 4.01641 4.26386 4.50387 4.65675 4.91841 4.93709 5.04852 5.12253 5.33572 5.35458 5.48768 6.00305 6.34549 6.48974 6.76864 6.78167 7.39934 7.52174 7.73017 8.55676 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.070418 B = 0.005107 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.529043 B = 5480.832028 C = 5803.640920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.009 3.991 3 H 0.194 0.806 4 C 0.245 3.755 5 N -0.479 5.479 6 C 0.504 3.496 7 O -0.584 6.584 8 N -0.599 5.599 9 C -0.043 4.043 10 C -0.063 4.063 11 N -0.315 5.315 12 N -0.171 5.171 13 C -0.351 4.351 14 H 0.144 0.856 15 C -0.009 4.009 16 N -0.828 5.828 17 Si 1.018 2.982 18 H -0.237 1.237 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.072 4.072 22 H 0.051 0.949 23 H 0.104 0.896 24 H 0.113 0.887 25 H 0.429 0.571 26 H 0.162 0.838 27 H 0.274 0.726 28 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.805 12.954 4.619 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.015 4.015 3 H 0.210 0.790 4 C -0.074 4.074 5 N -0.155 5.155 6 C 0.290 3.710 7 O -0.464 6.464 8 N -0.244 5.244 9 C -0.150 4.150 10 C -0.238 4.238 11 N -0.147 5.147 12 N 0.060 4.940 13 C -0.482 4.482 14 H 0.162 0.838 15 C -0.220 4.220 16 N -0.456 5.456 17 Si 0.837 3.163 18 H -0.160 1.160 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.222 4.222 22 H 0.070 0.930 23 H 0.123 0.877 24 H 0.132 0.868 25 H 0.268 0.732 26 H 0.179 0.821 27 H 0.084 0.916 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.053 10.467 5.298 14.229 hybrid contribution -0.202 0.341 -0.364 0.538 sum -8.255 10.807 4.935 14.467 Atomic orbital electron populations 1.21927 0.86882 1.04052 1.07045 1.19081 1.00472 1.01020 0.80900 0.78972 1.28876 0.92049 0.92558 0.93878 1.81168 1.09859 1.09609 1.14821 1.20731 0.80692 0.84682 0.84915 1.90691 1.40154 1.28777 1.86758 1.42174 1.50325 1.30100 1.01828 1.17261 1.10860 1.00335 0.86502 1.24156 1.04559 0.99580 0.95535 1.78173 1.21248 1.15294 0.99951 1.44866 1.28034 1.15358 1.05777 1.20661 1.34736 1.15799 0.77015 0.83832 1.26876 0.94159 0.94046 1.06927 1.70416 1.24777 1.11698 1.38709 0.84553 0.78769 0.79557 0.73435 1.15987 1.20087 1.20080 1.22087 1.09555 1.01747 0.88806 0.93008 0.87716 0.86804 0.73194 0.82137 0.91607 0.78738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.04 71.98 0.65 -0.60 15 2 C 0.01 0.15 3.10 -13.35 -0.04 0.10 15 3 H 0.19 1.04 8.14 -2.39 -0.02 1.02 15 4 C 0.24 6.25 13.88 89.44 1.24 7.49 15 5 N -0.48 -15.56 18.54 20.01 0.37 -15.19 15 6 C 0.50 14.46 7.11 87.66 0.62 15.08 15 7 O -0.58 -24.56 13.18 -3.13 -0.04 -24.60 15 8 N -0.60 -16.38 5.36 -303.91 -1.63 -18.01 15 9 C -0.04 -1.81 6.90 37.73 0.26 -1.55 15 10 C -0.06 -3.34 10.85 85.42 0.93 -2.41 15 11 N -0.31 -18.72 10.40 -56.47 -0.59 -19.30 15 12 N -0.17 -9.16 3.74 -190.01 -0.71 -9.87 15 13 C -0.35 -17.99 10.25 84.01 0.86 -17.12 15 14 H 0.14 6.26 7.83 -2.91 -0.02 6.24 15 15 C -0.01 -0.46 5.50 84.95 0.47 0.01 15 16 N -0.83 -47.70 11.81 21.66 0.26 -47.45 15 17 Si 1.02 37.95 29.55 68.60 2.03 39.98 15 18 H -0.24 -7.77 7.11 99.48 0.71 -7.06 15 19 H -0.28 -10.21 7.11 99.48 0.71 -9.51 15 20 H -0.28 -10.21 7.11 99.48 0.71 -9.50 15 21 C -0.07 -3.02 11.49 83.38 0.96 -2.07 15 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 15 23 H 0.10 0.45 8.14 -2.39 -0.02 0.43 15 24 H 0.11 0.38 7.56 -2.38 -0.02 0.36 15 25 H 0.43 6.61 8.24 -92.71 -0.76 5.85 15 26 H 0.16 8.82 5.92 -2.91 -0.02 8.81 15 27 H 0.27 14.58 8.31 -92.70 -0.77 13.81 15 28 H 0.20 6.07 8.06 -2.91 -0.02 6.04 15 Total: -1.00 -84.41 262.37 6.08 -78.33 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.45 Total: 17.19 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.95 Total: -1.07 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -2.30 Total: -109.83 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.04 Total: -24.60 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -84.41 6.08 -78.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318856938.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.764 kcal (2) G-P(sol) polarization free energy of solvation -84.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds