Wall clock time and date at job start Sun Mar 29 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99960 * 2 1 4 4 H 1.48504 * 109.46985 * 269.99600 * 3 2 1 5 5 H 1.48502 * 109.47121 * 29.99696 * 3 2 1 6 6 H 1.48504 * 109.47079 * 149.99734 * 3 2 1 7 7 C 1.37872 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47345 * 300.00238 * 9 7 2 11 11 O 1.42903 * 109.46442 * 60.00168 * 9 7 2 12 12 C 1.53001 * 109.47316 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.46893 * 180.02562 * 12 9 7 14 14 C 1.48128 * 110.99719 * 184.96365 * 13 12 9 15 15 C 1.50863 * 105.66486 * 213.21647 * 14 13 12 16 16 C 1.38297 * 132.92967 * 197.32352 * 15 14 13 17 17 C 1.38325 * 118.93199 * 179.97438 * 16 15 14 18 18 N 1.31895 * 120.77552 * 0.02562 * 17 16 15 19 19 C 1.31959 * 121.85299 * 359.97438 * 18 17 16 20 20 C 1.38021 * 120.57132 * 0.02621 * 19 18 17 21 21 C 1.48093 * 111.00361 * 69.87289 * 13 12 9 22 22 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 23 23 H 0.96700 * 114.00311 * 60.00230 * 11 9 7 24 24 H 1.08999 * 109.47164 * 300.00418 * 12 9 7 25 25 H 1.08997 * 109.47124 * 60.00119 * 12 9 7 26 26 H 1.08998 * 110.20923 * 332.26467 * 14 13 12 27 27 H 1.09001 * 110.20583 * 94.16817 * 14 13 12 28 28 H 1.08000 * 120.53793 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.61186 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.71319 * 179.97438 * 19 18 17 31 31 H 1.08997 * 110.20266 * 265.86422 * 21 13 12 32 32 H 1.09000 * 110.20497 * 27.66960 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4291 -2.5755 -1.1648 12 6 2.2453 -3.6621 0.0015 13 7 1.5107 -4.9342 0.0020 14 6 2.4384 -6.0828 0.1214 15 6 1.8098 -7.1988 -0.6757 16 6 2.0121 -8.5666 -0.7029 17 6 1.2559 -9.3378 -1.5671 18 7 0.3555 -8.7826 -2.3549 19 6 0.1372 -7.4812 -2.3542 20 6 0.8545 -6.6496 -1.5182 21 6 0.8327 -5.1562 -1.2958 22 1 -0.4850 0.8401 -0.0004 23 1 0.9209 -2.5307 -1.9962 24 1 2.8713 -3.6047 -0.8890 25 1 2.8726 -3.6040 0.8909 26 1 3.4123 -5.8251 -0.2948 27 1 2.5405 -6.3773 1.1659 28 1 2.7486 -9.0253 -0.0598 29 1 1.4046 -10.4071 -1.5971 30 1 -0.6085 -7.0632 -3.0142 31 1 -0.1956 -4.7978 -1.2495 32 1 1.3726 -4.6475 -2.0945 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336004575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:46 Heat of formation + Delta-G solvation = 0.674173 kcal Electronic energy + Delta-G solvation = -16090.276182 eV Core-core repulsion = 13437.018594 eV Total energy + Delta-G solvation = -2653.257588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72526 -37.83796 -35.40630 -32.24887 -32.00793 -31.51937 -28.37933 -27.67679 -25.40582 -23.11647 -21.88176 -21.35306 -20.39950 -17.11865 -16.51468 -16.18599 -15.54751 -15.18610 -14.63406 -14.27020 -14.18404 -13.97464 -13.29765 -13.16652 -12.75696 -12.56734 -12.13186 -11.75819 -11.33771 -11.04716 -11.00644 -10.87795 -10.72820 -10.09920 -9.60255 -9.50936 -9.11932 -8.91680 -8.61747 -8.21428 -7.91445 -6.04668 -4.23745 1.15339 1.27139 3.24836 3.32396 3.34473 3.81345 4.23220 4.38589 4.41457 4.47713 4.72563 5.05958 5.22250 5.23687 5.34756 5.51349 5.70482 5.78214 5.83778 5.95899 6.02637 6.12036 6.19782 6.38268 6.49866 6.70836 6.77458 7.17184 7.32223 7.71108 7.85749 7.98248 8.13499 8.79181 9.31870 9.53260 10.99492 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.064049 B = 0.005329 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.060375 B = 5252.836935 C = 5541.079961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.081 3.919 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.576 4.576 8 H 0.055 0.945 9 C 0.236 3.764 10 H 0.065 0.935 11 O -0.561 6.561 12 C 0.020 3.980 13 N -0.497 5.497 14 C 0.068 3.932 15 C -0.061 4.061 16 C -0.157 4.157 17 C 0.089 3.911 18 N -0.485 5.485 19 C 0.112 3.888 20 C -0.146 4.146 21 C 0.092 3.908 22 H 0.261 0.739 23 H 0.340 0.660 24 H 0.028 0.972 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.108 0.892 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -13.456 -2.380 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.614 4.614 8 H 0.073 0.927 9 C 0.179 3.821 10 H 0.083 0.917 11 O -0.363 6.363 12 C -0.108 4.108 13 N -0.220 5.220 14 C -0.060 4.060 15 C -0.070 4.070 16 C -0.177 4.177 17 C -0.069 4.069 18 N -0.194 5.194 19 C -0.044 4.044 20 C -0.149 4.149 21 C -0.036 4.036 22 H 0.071 0.929 23 H 0.183 0.817 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.173 0.827 31 H 0.126 0.874 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.840 -13.861 -2.008 14.291 hybrid contribution 2.184 1.494 -0.384 2.674 sum 5.024 -12.367 -2.391 13.561 Atomic orbital electron populations 1.70078 1.05917 1.26506 1.46673 1.25013 0.94681 0.99095 0.93743 0.86668 0.79965 0.83505 0.78190 1.20557 1.21056 1.19845 1.21594 0.93113 0.91460 1.55229 0.92697 1.19371 0.87980 0.88369 0.86424 0.91725 1.86624 1.38457 1.96028 1.15183 1.23369 0.97505 0.89739 1.00145 1.65401 1.24467 1.01665 1.30494 1.21733 0.95271 0.89136 0.99855 1.21016 0.95627 0.94323 0.95993 1.21470 1.02046 0.92761 1.01416 1.22663 0.91997 1.00123 0.92068 1.67740 1.17360 1.12516 1.21787 1.22110 0.97567 0.88151 0.96605 1.22009 0.97134 0.98566 0.97164 1.21665 1.02894 0.88011 0.91040 0.92916 0.81688 0.95327 0.90781 0.92082 0.89137 0.85012 0.82737 0.82652 0.87357 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 12.84 55.43 0.71 -24.17 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.58 -15.33 8.76 -34.44 -0.30 -15.63 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.24 5.78 3.08 -27.88 -0.09 5.69 16 10 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 11 O -0.56 -13.52 10.03 -35.23 -0.35 -13.88 16 12 C 0.02 0.40 4.42 -3.82 -0.02 0.38 16 13 N -0.50 -8.92 5.47 -235.12 -1.29 -10.21 16 14 C 0.07 0.99 6.60 -4.22 -0.03 0.97 16 15 C -0.06 -0.87 6.33 -104.34 -0.66 -1.53 16 16 C -0.16 -1.86 10.12 -39.53 -0.40 -2.26 16 17 C 0.09 1.06 11.19 -17.49 -0.20 0.87 16 18 N -0.49 -6.84 10.36 -13.24 -0.14 -6.98 16 19 C 0.11 1.58 11.19 -17.58 -0.20 1.38 16 20 C -0.15 -2.21 6.31 -104.38 -0.66 -2.87 16 21 C 0.09 1.54 4.93 -4.17 -0.02 1.52 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.34 7.30 8.44 45.56 0.38 7.69 16 24 H 0.03 0.55 7.82 -51.93 -0.41 0.14 16 25 H 0.07 1.43 8.13 -51.93 -0.42 1.00 16 26 H 0.06 0.85 7.81 -51.93 -0.41 0.44 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.11 1.99 7.34 -51.93 -0.38 1.61 16 32 H 0.06 1.03 6.89 -51.93 -0.36 0.67 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -30.34 270.84 -7.91 -38.25 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.24 Total: 6.55 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.66 Total: -9.36 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.71 Total: -41.36 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.35 Total: -13.88 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.34 -7.91 -38.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336004575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.923 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds