Wall clock time and date at job start Sun Mar 29 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99960 * 2 1 4 4 H 1.48504 * 109.46985 * 269.99600 * 3 2 1 5 5 H 1.48502 * 109.47121 * 29.99696 * 3 2 1 6 6 H 1.48504 * 109.47079 * 149.99734 * 3 2 1 7 7 C 1.37872 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47345 * 300.00238 * 9 7 2 11 11 O 1.42903 * 109.46442 * 60.00168 * 9 7 2 12 12 C 1.53001 * 109.47316 * 179.97438 * 9 7 2 13 13 N 1.46898 * 109.46893 * 180.02562 * 12 9 7 14 14 C 1.48128 * 110.99719 * 184.96365 * 13 12 9 15 15 C 1.50863 * 105.66486 * 213.21647 * 14 13 12 16 16 C 1.38297 * 132.92967 * 197.32352 * 15 14 13 17 17 C 1.38325 * 118.93199 * 179.97438 * 16 15 14 18 18 N 1.31895 * 120.77552 * 0.02562 * 17 16 15 19 19 C 1.31959 * 121.85299 * 359.97438 * 18 17 16 20 20 C 1.38021 * 120.57132 * 0.02621 * 19 18 17 21 21 C 1.48093 * 111.00361 * 69.87289 * 13 12 9 22 22 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 23 23 H 0.96700 * 114.00311 * 60.00230 * 11 9 7 24 24 H 1.08999 * 109.47164 * 300.00418 * 12 9 7 25 25 H 1.08997 * 109.47124 * 60.00119 * 12 9 7 26 26 H 1.08998 * 110.20923 * 332.26467 * 14 13 12 27 27 H 1.09001 * 110.20583 * 94.16817 * 14 13 12 28 28 H 1.08000 * 120.53793 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.61186 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.71319 * 179.97438 * 19 18 17 31 31 H 1.08997 * 110.20266 * 265.86422 * 21 13 12 32 32 H 1.09000 * 110.20497 * 27.66960 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 8 0.4291 -2.5755 -1.1648 12 6 2.2453 -3.6621 0.0015 13 7 1.5107 -4.9342 0.0020 14 6 2.4384 -6.0828 0.1214 15 6 1.8098 -7.1988 -0.6757 16 6 2.0121 -8.5666 -0.7029 17 6 1.2559 -9.3378 -1.5671 18 7 0.3555 -8.7826 -2.3549 19 6 0.1372 -7.4812 -2.3542 20 6 0.8545 -6.6496 -1.5182 21 6 0.8327 -5.1562 -1.2958 22 1 -0.4850 0.8401 -0.0004 23 1 0.9209 -2.5307 -1.9962 24 1 2.8713 -3.6047 -0.8890 25 1 2.8726 -3.6040 0.8909 26 1 3.4123 -5.8251 -0.2948 27 1 2.5405 -6.3773 1.1659 28 1 2.7486 -9.0253 -0.0598 29 1 1.4046 -10.4071 -1.5971 30 1 -0.6085 -7.0632 -3.0142 31 1 -0.1956 -4.7978 -1.2495 32 1 1.3726 -4.6475 -2.0945 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336004575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:46 Heat of formation + Delta-G solvation = -22.473420 kcal Electronic energy + Delta-G solvation = -16091.279937 eV Core-core repulsion = 13437.018594 eV Total energy + Delta-G solvation = -2654.261343 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.83107 -39.20444 -37.13350 -34.26176 -33.30844 -32.67247 -30.06574 -28.85923 -27.09179 -24.58017 -22.97263 -22.63031 -22.05743 -19.04475 -17.69266 -17.27872 -16.85574 -16.67260 -16.48669 -15.86561 -15.71116 -15.16342 -14.62688 -14.51720 -14.21776 -13.92709 -13.49196 -13.13935 -13.05926 -12.85641 -12.77023 -12.43968 -12.20092 -11.96566 -11.08474 -10.73039 -10.62327 -10.54073 -10.10601 -10.01070 -9.28338 -8.13030 -6.39233 0.14528 0.23034 1.41588 1.42517 1.53039 2.38641 2.79793 3.00301 3.13492 3.31101 3.40193 3.68532 4.02766 4.14651 4.26744 4.34475 4.40399 4.46846 4.53704 4.63700 4.69299 4.84896 4.92456 4.99591 5.09020 5.35545 5.62425 5.65802 5.73387 5.87086 5.95866 6.15549 6.73491 6.98214 7.33832 7.54299 8.91549 Molecular weight = 234.11amu Principal moments of inertia in cm(-1) A = 0.064049 B = 0.005329 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.060375 B = 5252.836935 C = 5541.079961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.587 4.587 8 H 0.062 0.938 9 C 0.237 3.763 10 H 0.021 0.979 11 O -0.571 6.571 12 C 0.040 3.960 13 N -0.518 5.518 14 C 0.071 3.929 15 C -0.071 4.071 16 C -0.148 4.148 17 C 0.092 3.908 18 N -0.504 5.504 19 C 0.105 3.895 20 C -0.167 4.167 21 C 0.100 3.900 22 H 0.261 0.739 23 H 0.351 0.649 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.168 0.832 29 H 0.193 0.807 30 H 0.166 0.834 31 H 0.081 0.919 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 -14.867 -2.456 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.625 4.625 8 H 0.080 0.920 9 C 0.179 3.821 10 H 0.039 0.961 11 O -0.375 6.375 12 C -0.088 4.088 13 N -0.241 5.241 14 C -0.056 4.056 15 C -0.080 4.080 16 C -0.168 4.168 17 C -0.065 4.065 18 N -0.213 5.213 19 C -0.051 4.051 20 C -0.170 4.170 21 C -0.029 4.029 22 H 0.070 0.930 23 H 0.195 0.805 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.123 0.877 28 H 0.185 0.815 29 H 0.209 0.791 30 H 0.183 0.817 31 H 0.100 0.900 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.682 -15.285 -2.089 16.122 hybrid contribution 1.596 1.809 -0.355 2.438 sum 6.279 -13.476 -2.444 15.067 Atomic orbital electron populations 1.70224 1.07707 1.27354 1.48306 1.25880 0.95423 1.02882 0.93345 0.85558 0.78742 0.78850 0.78393 1.19859 1.21090 1.18805 1.22010 0.93597 0.92561 1.54368 0.92014 1.19149 0.87878 0.90030 0.85020 0.96095 1.86572 1.39010 1.96171 1.15700 1.22944 0.96046 0.89133 1.00712 1.65260 1.25538 1.02019 1.31303 1.21740 0.94957 0.87964 1.00968 1.21141 0.95594 0.95404 0.95825 1.21832 1.02160 0.91519 1.01259 1.23348 0.90584 1.01879 0.90720 1.67812 1.18438 1.12204 1.22801 1.22289 0.97720 0.88383 0.96675 1.21854 0.98848 0.97430 0.98850 1.21414 1.01222 0.89654 0.90567 0.93017 0.80474 0.94487 0.90279 0.90889 0.87745 0.81488 0.79066 0.81686 0.90038 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.45 12.84 21.45 0.28 -53.17 16 2 C 0.03 1.51 5.40 84.65 0.46 1.96 16 3 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.59 -31.48 8.76 25.60 0.22 -31.25 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 9 C 0.24 11.90 3.08 29.85 0.09 12.00 16 10 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 11 O -0.57 -28.48 10.03 -148.98 -1.49 -29.98 16 12 C 0.04 1.56 4.42 86.30 0.38 1.95 16 13 N -0.52 -18.55 5.47 -897.79 -4.91 -23.46 16 14 C 0.07 1.95 6.60 85.37 0.56 2.52 16 15 C -0.07 -1.88 6.33 -19.68 -0.12 -2.01 16 16 C -0.15 -2.99 10.12 22.30 0.23 -2.76 16 17 C 0.09 1.88 11.19 84.70 0.95 2.83 16 18 N -0.50 -13.20 10.36 -195.81 -2.03 -15.23 16 19 C 0.10 2.88 11.19 84.62 0.95 3.83 16 20 C -0.17 -4.97 6.31 -19.71 -0.12 -5.10 16 21 C 0.10 3.41 4.93 85.42 0.42 3.83 16 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 23 H 0.35 15.48 8.44 -74.06 -0.63 14.86 16 24 H 0.04 1.38 7.82 -2.39 -0.02 1.37 16 25 H 0.08 2.99 8.13 -2.39 -0.02 2.97 16 26 H 0.07 1.85 7.81 -2.39 -0.02 1.83 16 27 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.08 3.16 7.34 -2.39 -0.02 3.15 16 32 H 0.06 2.01 6.89 -2.39 -0.02 1.99 16 Total: -1.00 -65.77 270.84 -1.62 -67.39 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.50 Total: 22.01 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 4.01 Total: -12.21 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -6.67 Total: -91.85 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.49 Total: -29.98 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -65.77 -1.62 -67.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336004575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.913 kcal (2) G-P(sol) polarization free energy of solvation -65.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds