Wall clock time and date at job start Sun Mar 29 2020 21:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40070 * 125.89957 * 2 1 4 4 C 1.30482 * 109.51333 * 180.02562 * 3 2 1 5 5 C 1.40711 * 108.42173 * 359.97438 * 4 3 2 6 6 C 1.36000 * 125.89962 * 180.02562 * 2 1 3 7 7 C 1.40989 * 134.22238 * 359.97438 * 6 2 1 8 8 N 1.30075 * 120.91318 * 179.97438 * 7 6 2 9 9 N 1.39696 * 122.39931 * 0.02838 * 8 7 6 10 10 C 1.46491 * 119.60988 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46957 * 269.99530 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.35110 * 120.77291 * 0.26950 * 9 8 7 20 20 O 1.21912 * 120.79805 * 179.72778 * 19 9 8 21 21 H 1.09002 * 109.47370 * 269.97741 * 1 2 3 22 22 H 1.08998 * 109.47117 * 29.98037 * 1 2 3 23 23 H 1.08994 * 109.46987 * 149.97833 * 1 2 3 24 24 H 1.07996 * 125.79259 * 179.97438 * 4 3 2 25 25 H 1.08001 * 119.54727 * 0.02562 * 7 6 2 26 26 H 1.09004 * 109.47166 * 149.99795 * 10 9 8 27 27 H 1.08994 * 109.47507 * 29.99502 * 10 9 8 28 28 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2863 1.1346 0.0000 4 6 3.5381 0.7665 -0.0006 5 6 3.5881 -0.6397 -0.0003 6 6 2.2625 -1.1017 -0.0005 7 6 2.0206 -2.4907 -0.0007 8 7 3.0054 -3.3404 -0.0017 9 7 4.3427 -2.9364 -0.0021 10 6 5.4038 -3.9463 -0.0026 11 6 5.7683 -4.2928 1.4180 12 1 5.2599 -3.8094 2.2392 13 6 6.7464 -5.2316 1.6695 14 7 7.0606 -5.5379 2.9092 15 14 7.6252 -6.0681 0.2491 16 1 8.8270 -5.2791 -0.1230 17 1 8.0376 -7.4348 0.6583 18 1 6.7098 -6.1555 -0.9169 19 6 4.6687 -1.6253 0.0041 20 8 5.8356 -1.2722 0.0087 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5135 23 1 -0.3633 -0.8897 -0.5141 24 1 4.3912 1.4288 -0.0011 25 1 1.0036 -2.8542 -0.0008 26 1 6.2804 -3.5520 -0.5167 27 1 5.0534 -4.8414 -0.5164 28 1 7.7490 -6.1980 3.0861 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348815007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:21 Heat of formation + Delta-G solvation = 68.667359 kcal Electronic energy + Delta-G solvation = -15900.104830 eV Core-core repulsion = 13146.255304 eV Total energy + Delta-G solvation = -2753.849526 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 234.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.84695 -40.55817 -38.12812 -35.56731 -34.51815 -33.90222 -31.31878 -30.14134 -27.94956 -25.46850 -25.14387 -23.22738 -21.91489 -19.61713 -19.24453 -18.90457 -17.91646 -17.14146 -16.60139 -16.23506 -16.05777 -15.58446 -15.11028 -14.54710 -14.11572 -13.93202 -13.86139 -13.62302 -13.49163 -13.09908 -12.65221 -12.38922 -12.15889 -11.91345 -11.78573 -11.00420 -10.88036 -10.86330 -10.00495 -9.52962 -8.37852 -6.46133 -0.44651 0.65726 1.14554 1.23406 1.28163 1.36971 1.39625 1.48937 2.29907 2.41808 2.91776 3.06009 3.27019 3.34298 3.63696 4.25938 4.43017 4.46022 4.50024 4.64637 4.71962 4.76731 5.06340 5.11353 5.17923 5.30282 5.66011 6.11288 6.22129 6.51967 6.72844 7.02183 7.17025 8.79315 Molecular weight = 234.09amu Principal moments of inertia in cm(-1) A = 0.046069 B = 0.006797 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.633839 B = 4118.355883 C = 4346.120874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.332 5.332 3 N -0.277 5.277 4 C 0.109 3.891 5 C -0.300 4.300 6 C 0.118 3.882 7 C 0.117 3.883 8 N -0.215 5.215 9 N -0.418 5.418 10 C 0.239 3.761 11 C -0.544 4.544 12 H 0.022 0.978 13 C 0.016 3.984 14 N -0.941 5.941 15 Si 0.951 3.049 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.235 1.235 19 C 0.537 3.463 20 O -0.575 6.575 21 H 0.100 0.900 22 H 0.110 0.890 23 H 0.129 0.871 24 H 0.212 0.788 25 H 0.252 0.748 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.287 8.190 -9.529 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.114 5.114 3 N -0.098 5.098 4 C -0.077 4.077 5 C -0.319 4.319 6 C -0.017 4.017 7 C -0.088 4.088 8 N -0.026 5.026 9 N -0.236 5.236 10 C 0.119 3.881 11 C -0.583 4.583 12 H 0.041 0.959 13 C -0.182 4.182 14 N -0.580 5.580 15 Si 0.772 3.228 16 H -0.195 1.195 17 H -0.195 1.195 18 H -0.158 1.158 19 C 0.330 3.670 20 O -0.454 6.454 21 H 0.118 0.882 22 H 0.128 0.872 23 H 0.148 0.852 24 H 0.228 0.772 25 H 0.268 0.732 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.200 8.332 -9.422 21.308 hybrid contribution 1.419 -0.101 0.254 1.445 sum -15.780 8.231 -9.168 20.020 Atomic orbital electron populations 1.22673 0.69356 1.07725 1.06109 1.49014 1.08463 1.00606 1.53350 1.77143 1.01308 1.07732 1.23641 1.23841 0.95811 0.92126 0.95953 1.21012 0.92749 0.95642 1.22483 1.20073 0.90496 0.91610 0.99478 1.23860 1.00687 0.84972 0.99293 1.74669 0.88478 1.29277 1.10219 1.49488 1.03524 1.06237 1.64323 1.19598 0.84552 0.87076 0.96845 1.21300 1.21721 1.23909 0.91350 0.95919 1.25847 0.96646 0.96609 0.99144 1.70033 1.32488 1.34021 1.21457 0.85672 0.79559 0.78077 0.79455 1.19477 1.19457 1.15795 1.18389 0.88914 0.82453 0.77222 1.90811 1.21598 1.79775 1.53247 0.88155 0.87178 0.85231 0.77191 0.73214 0.93848 0.91493 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.44 127.77 1.46 2.06 15 2 N -0.33 -6.97 4.04 -360.76 -1.46 -8.43 15 3 N -0.28 -7.28 12.47 -56.65 -0.71 -7.99 15 4 C 0.11 3.33 12.04 85.50 1.03 4.35 15 5 C -0.30 -10.94 6.37 -20.07 -0.13 -11.07 15 6 C 0.12 3.20 6.91 39.69 0.27 3.48 15 7 C 0.12 2.86 11.29 85.63 0.97 3.83 15 8 N -0.21 -7.87 11.43 -56.67 -0.65 -8.52 15 9 N -0.42 -19.50 3.50 -470.59 -1.64 -21.15 15 10 C 0.24 12.38 4.51 85.64 0.39 12.76 15 11 C -0.54 -33.42 9.94 25.60 0.25 -33.16 15 12 H 0.02 1.57 8.06 -2.91 -0.02 1.55 15 13 C 0.02 0.98 5.47 84.66 0.46 1.45 15 14 N -0.94 -60.14 13.96 21.45 0.30 -59.84 15 15 Si 0.95 44.25 27.47 68.60 1.88 46.14 15 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 18 H -0.24 -9.79 6.54 99.48 0.65 -9.14 15 19 C 0.54 25.32 7.71 86.27 0.66 25.99 15 20 O -0.58 -31.38 16.78 -5.03 -0.08 -31.46 15 21 H 0.10 0.51 8.14 -2.39 -0.02 0.49 15 22 H 0.11 0.59 8.14 -2.39 -0.02 0.57 15 23 H 0.13 0.10 8.14 -2.39 -0.02 0.09 15 24 H 0.21 5.50 8.06 -2.91 -0.02 5.47 15 25 H 0.25 2.52 8.06 -2.91 -0.02 2.50 15 26 H 0.04 2.30 6.87 -2.38 -0.02 2.28 15 27 H 0.07 3.17 7.19 -2.39 -0.02 3.16 15 28 H 0.27 16.00 8.31 -92.71 -0.77 15.23 15 Total: -1.00 -86.45 257.04 4.15 -82.30 By element: Atomic # 1 Polarization: -1.87 SS G_CDS: 1.13 Total: -0.74 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.37 Total: 9.68 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -4.16 Total: -105.92 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.08 Total: -31.46 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Total: -86.45 4.15 -82.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348815007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.972 kcal (2) G-P(sol) polarization free energy of solvation -86.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds