Wall clock time and date at job start Sun Mar 29 2020 22:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38664 * 120.79288 * 2 1 4 4 C 1.38181 * 119.16659 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.76219 * 0.02562 * 4 3 2 6 6 C 1.31857 * 121.72845 * 359.68636 * 5 4 3 7 7 C 1.38229 * 120.75951 * 0.57796 * 6 5 4 8 8 C 1.50700 * 120.41943 * 179.73283 * 7 6 5 9 9 N 1.46900 * 109.47277 * 105.76528 * 8 7 6 10 10 C 1.46898 * 110.99777 * 296.24896 * 9 8 7 11 11 C 1.46903 * 110.99834 * 172.29677 * 9 8 7 12 12 H 1.08994 * 109.47025 * 60.00284 * 11 9 8 13 13 C 1.52996 * 109.47143 * 300.00005 * 11 9 8 14 14 C 1.50702 * 109.46708 * 180.02562 * 11 9 8 15 15 H 1.07998 * 120.00373 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99497 * 180.02562 * 14 11 9 17 17 N 1.31508 * 120.00254 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99620 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47218 * 59.99674 * 18 16 14 20 20 H 1.48496 * 109.47169 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47165 * 299.99619 * 18 16 14 22 22 H 1.09003 * 109.47044 * 264.15495 * 1 2 3 23 23 H 1.08996 * 109.46748 * 24.15186 * 1 2 3 24 24 H 1.08997 * 109.47457 * 144.15791 * 1 2 3 25 25 H 1.08002 * 120.41752 * 359.95943 * 3 2 1 26 26 H 1.08000 * 119.62286 * 180.02562 * 4 3 2 27 27 H 1.07998 * 119.62126 * 180.28613 * 6 5 4 28 28 H 1.08996 * 109.47007 * 345.76339 * 8 7 6 29 29 H 1.09004 * 109.46944 * 225.76551 * 8 7 6 30 30 H 1.08996 * 109.47357 * 291.01332 * 10 9 8 31 31 H 1.09004 * 109.47194 * 51.01549 * 10 9 8 32 32 H 1.09004 * 109.47135 * 171.01006 * 10 9 8 33 33 H 1.08995 * 109.47263 * 60.00026 * 13 11 9 34 34 H 1.09000 * 109.46906 * 180.02562 * 13 11 9 35 35 H 1.09008 * 109.47225 * 299.99842 * 13 11 9 36 36 H 0.97007 * 119.99780 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 0.0005 5 7 4.2403 0.0000 0.0005 6 6 3.5983 -1.1518 0.0062 7 6 2.2166 -1.1910 0.0003 8 6 1.4907 -2.5116 0.0008 9 7 0.9194 -2.7560 1.3319 10 6 1.9770 -2.8846 2.3432 11 6 0.0524 -3.9418 1.3230 12 1 0.6339 -4.8148 1.0267 13 6 -1.0916 -3.7298 0.3295 14 6 -0.5146 -4.1598 2.7022 15 1 -0.2564 -3.4852 3.5051 16 6 -1.3622 -5.2211 2.9392 17 7 -1.6763 -6.0429 1.9617 18 14 -2.0645 -5.4917 4.6489 19 1 -2.8570 -4.3025 5.0525 20 1 -2.9410 -6.6904 4.6400 21 1 -0.9541 -5.6971 5.6134 22 1 -0.3633 -0.1047 1.0224 23 1 -0.3633 0.9377 -0.4205 24 1 -0.3634 -0.8330 -0.6017 25 1 1.6968 2.1377 -0.0007 26 1 4.1584 2.0753 0.0010 27 1 4.1585 -2.0751 0.0107 28 1 2.1897 -3.3105 -0.2468 29 1 0.6906 -2.4867 -0.7391 30 1 2.5301 -3.8087 2.1750 31 1 2.6566 -2.0357 2.2683 32 1 1.5292 -2.9049 3.3368 33 1 -0.6819 -3.5718 -0.6681 34 1 -1.7351 -4.6095 0.3233 35 1 -1.6732 -2.8567 0.6259 36 1 -2.2729 -6.7894 2.1285 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269638391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:29 Heat of formation + Delta-G solvation = 35.421038 kcal Electronic energy + Delta-G solvation = -16710.236994 eV Core-core repulsion = 14194.319237 eV Total energy + Delta-G solvation = -2515.917757 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14317 -37.02413 -33.84904 -32.85622 -31.28329 -29.12303 -27.71136 -26.82607 -24.73041 -23.53434 -22.35518 -21.02789 -19.32316 -16.50947 -16.30657 -16.12353 -15.37677 -14.80886 -14.32098 -13.92941 -13.54747 -13.39862 -12.75984 -12.54334 -12.37330 -12.33914 -12.16044 -11.77476 -11.15421 -11.06144 -11.03248 -10.75544 -10.70594 -10.17808 -10.09359 -9.92624 -9.17896 -9.15182 -8.97668 -8.68208 -8.42364 -7.22120 -6.03774 -4.08383 1.33295 1.52285 3.30427 3.34952 3.37764 3.99514 4.39394 4.63243 4.93970 5.01817 5.05614 5.21337 5.27288 5.38621 5.69026 5.74389 5.86261 5.95431 6.02995 6.12634 6.24594 6.28619 6.40425 6.45689 6.71007 6.76955 6.80763 6.96779 6.99424 7.09913 7.46803 7.66896 7.80129 8.14107 8.17919 8.28412 8.55182 8.97721 9.56837 11.02926 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.041015 B = 0.006235 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.509613 B = 4489.370894 C = 4585.137550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.017 4.017 3 C -0.180 4.180 4 C 0.086 3.914 5 N -0.495 5.495 6 C 0.100 3.900 7 C -0.117 4.117 8 C 0.088 3.912 9 N -0.528 5.528 10 C 0.040 3.960 11 C 0.212 3.788 12 H -0.001 1.001 13 C -0.133 4.133 14 C -0.504 4.504 15 H 0.062 0.938 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.088 0.912 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.014 0.986 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.007 0.993 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.350 10.412 -4.499 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.026 4.026 3 C -0.200 4.200 4 C -0.071 4.071 5 N -0.204 5.204 6 C -0.057 4.057 7 C -0.119 4.119 8 C -0.040 4.040 9 N -0.253 5.253 10 C -0.109 4.109 11 C 0.107 3.893 12 H 0.016 0.984 13 C -0.191 4.191 14 C -0.542 4.542 15 H 0.080 0.920 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.204 1.204 22 H 0.107 0.893 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.147 0.853 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.026 0.974 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.846 10.628 -4.409 12.906 hybrid contribution -0.783 -0.907 0.737 1.407 sum 5.063 9.721 -3.671 11.559 Atomic orbital electron populations 1.20791 0.89846 1.01889 1.04130 1.20229 0.97177 0.91993 0.93183 1.22000 0.95535 0.98527 1.03975 1.22586 0.91795 0.96023 0.96670 1.67627 1.41259 0.98482 1.13066 1.22643 0.91339 0.95943 0.95823 1.20903 0.94556 0.96419 1.00026 1.21027 0.97212 0.91029 0.94738 1.62204 1.18544 1.42715 1.01834 1.22177 0.93384 0.97675 0.97662 1.19272 0.89481 0.84488 0.96080 0.98377 1.21869 1.00285 1.02368 0.94618 1.21094 1.27732 1.10886 0.94489 0.91960 1.24920 0.96368 0.95851 0.97023 1.69876 1.36118 1.15969 1.31300 0.86588 0.78984 0.77511 0.84479 1.20246 1.21360 1.20369 0.89343 0.92472 0.90629 0.85323 0.83431 0.83409 0.95067 0.89512 0.96735 0.94077 0.90925 0.97371 0.89618 0.94574 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.49 36.01 0.34 -1.19 16 2 C -0.02 -0.26 5.92 -104.32 -0.62 -0.88 16 3 C -0.18 -2.32 9.80 -39.44 -0.39 -2.71 16 4 C 0.09 1.13 11.18 -17.55 -0.20 0.94 16 5 N -0.50 -7.61 10.36 -13.25 -0.14 -7.75 16 6 C 0.10 1.54 10.08 -17.54 -0.18 1.36 16 7 C -0.12 -1.86 4.33 -104.48 -0.45 -2.31 16 8 C 0.09 1.56 4.25 -4.98 -0.02 1.54 16 9 N -0.53 -10.90 4.53 -237.73 -1.08 -11.97 16 10 C 0.04 0.78 9.03 60.06 0.54 1.33 16 11 C 0.21 5.18 2.05 -68.86 -0.14 5.04 16 12 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 13 C -0.13 -3.10 8.75 37.16 0.33 -2.78 16 14 C -0.50 -13.44 7.98 -34.44 -0.27 -13.71 16 15 H 0.06 1.66 6.41 -52.49 -0.34 1.33 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 23 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 24 H 0.07 1.11 6.64 -51.93 -0.34 0.77 16 25 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.15 2.08 8.00 -52.49 -0.42 1.66 16 28 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 29 H 0.09 1.53 4.67 -51.93 -0.24 1.28 16 30 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 31 H 0.04 0.74 6.36 -51.93 -0.33 0.41 16 32 H 0.07 1.52 6.43 -51.93 -0.33 1.19 16 33 H 0.01 0.16 6.24 -51.93 -0.32 -0.17 16 34 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 35 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -28.40 289.07 -7.55 -35.95 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.15 Total: -0.39 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.15 Total: -11.86 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.59 Total: -44.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.40 -7.55 -35.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269638391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.373 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds