Wall clock time and date at job start Sun Mar 29 2020 22:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38664 * 120.79288 * 2 1 4 4 C 1.38181 * 119.16659 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.76219 * 0.02562 * 4 3 2 6 6 C 1.31857 * 121.72845 * 359.68636 * 5 4 3 7 7 C 1.38229 * 120.75951 * 0.57796 * 6 5 4 8 8 C 1.50700 * 120.41943 * 179.73283 * 7 6 5 9 9 N 1.46900 * 109.47277 * 105.76528 * 8 7 6 10 10 C 1.46898 * 110.99777 * 296.24896 * 9 8 7 11 11 C 1.46903 * 110.99834 * 172.29677 * 9 8 7 12 12 H 1.08994 * 109.47025 * 60.00284 * 11 9 8 13 13 C 1.52996 * 109.47143 * 300.00005 * 11 9 8 14 14 C 1.50702 * 109.46708 * 180.02562 * 11 9 8 15 15 H 1.07998 * 120.00373 * 359.97438 * 14 11 9 16 16 C 1.37880 * 119.99497 * 180.02562 * 14 11 9 17 17 N 1.31508 * 120.00254 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99620 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47218 * 59.99674 * 18 16 14 20 20 H 1.48496 * 109.47169 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47165 * 299.99619 * 18 16 14 22 22 H 1.09003 * 109.47044 * 264.15495 * 1 2 3 23 23 H 1.08996 * 109.46748 * 24.15186 * 1 2 3 24 24 H 1.08997 * 109.47457 * 144.15791 * 1 2 3 25 25 H 1.08002 * 120.41752 * 359.95943 * 3 2 1 26 26 H 1.08000 * 119.62286 * 180.02562 * 4 3 2 27 27 H 1.07998 * 119.62126 * 180.28613 * 6 5 4 28 28 H 1.08996 * 109.47007 * 345.76339 * 8 7 6 29 29 H 1.09004 * 109.46944 * 225.76551 * 8 7 6 30 30 H 1.08996 * 109.47357 * 291.01332 * 10 9 8 31 31 H 1.09004 * 109.47194 * 51.01549 * 10 9 8 32 32 H 1.09004 * 109.47135 * 171.01006 * 10 9 8 33 33 H 1.08995 * 109.47263 * 60.00026 * 13 11 9 34 34 H 1.09000 * 109.46906 * 180.02562 * 13 11 9 35 35 H 1.09008 * 109.47225 * 299.99842 * 13 11 9 36 36 H 0.97007 * 119.99780 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 0.0005 5 7 4.2403 0.0000 0.0005 6 6 3.5983 -1.1518 0.0062 7 6 2.2166 -1.1910 0.0003 8 6 1.4907 -2.5116 0.0008 9 7 0.9194 -2.7560 1.3319 10 6 1.9770 -2.8846 2.3432 11 6 0.0524 -3.9418 1.3230 12 1 0.6339 -4.8148 1.0267 13 6 -1.0916 -3.7298 0.3295 14 6 -0.5146 -4.1598 2.7022 15 1 -0.2564 -3.4852 3.5051 16 6 -1.3622 -5.2211 2.9392 17 7 -1.6763 -6.0429 1.9617 18 14 -2.0645 -5.4917 4.6489 19 1 -2.8570 -4.3025 5.0525 20 1 -2.9410 -6.6904 4.6400 21 1 -0.9541 -5.6971 5.6134 22 1 -0.3633 -0.1047 1.0224 23 1 -0.3633 0.9377 -0.4205 24 1 -0.3634 -0.8330 -0.6017 25 1 1.6968 2.1377 -0.0007 26 1 4.1584 2.0753 0.0010 27 1 4.1585 -2.0751 0.0107 28 1 2.1897 -3.3105 -0.2468 29 1 0.6906 -2.4867 -0.7391 30 1 2.5301 -3.8087 2.1750 31 1 2.6566 -2.0357 2.2683 32 1 1.5292 -2.9049 3.3368 33 1 -0.6819 -3.5718 -0.6681 34 1 -1.7351 -4.6095 0.3233 35 1 -1.6732 -2.8567 0.6259 36 1 -2.2729 -6.7894 2.1285 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269638391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:29 Heat of formation + Delta-G solvation = 18.134091 kcal Electronic energy + Delta-G solvation = -16710.986612 eV Core-core repulsion = 14194.319237 eV Total energy + Delta-G solvation = -2516.667375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29244 -38.66523 -35.30485 -34.44877 -32.66494 -30.91015 -28.95241 -28.29559 -26.60290 -25.10131 -23.52105 -22.40783 -21.02585 -18.39378 -17.57445 -17.27859 -17.05134 -16.10768 -16.01224 -15.54241 -14.98118 -14.74276 -14.26285 -14.00318 -13.79229 -13.62872 -13.43395 -13.18507 -12.94266 -12.71859 -12.65064 -12.59510 -12.20459 -12.03912 -11.98505 -11.69845 -10.91545 -10.52277 -10.32313 -10.23651 -9.85650 -8.94544 -8.10223 -6.21694 0.23233 0.40131 1.43426 1.44286 1.51890 2.42782 2.86934 3.18419 3.45376 3.59999 3.86189 3.95459 4.05741 4.16254 4.48842 4.54144 4.62665 4.68646 4.71881 4.78404 4.88491 4.92542 5.00793 5.04498 5.06601 5.17425 5.25105 5.34887 5.51780 5.61096 5.73589 5.80400 5.88125 6.27203 6.36899 6.70859 6.92127 7.08052 7.47444 8.95287 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.041015 B = 0.006235 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.509613 B = 4489.370894 C = 4585.137550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.029 4.029 3 C -0.172 4.172 4 C 0.087 3.913 5 N -0.514 5.514 6 C 0.092 3.908 7 C -0.133 4.133 8 C 0.094 3.906 9 N -0.528 5.528 10 C 0.047 3.953 11 C 0.217 3.783 12 H -0.038 1.038 13 C -0.120 4.120 14 C -0.518 4.518 15 H 0.058 0.942 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.957 3.043 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.163 0.837 26 H 0.183 0.817 27 H 0.152 0.848 28 H 0.028 0.972 29 H 0.086 0.914 30 H 0.007 0.993 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 12.524 -4.359 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.037 4.037 3 C -0.192 4.192 4 C -0.070 4.070 5 N -0.223 5.223 6 C -0.065 4.065 7 C -0.135 4.135 8 C -0.034 4.034 9 N -0.252 5.252 10 C -0.101 4.101 11 C 0.111 3.889 12 H -0.020 1.020 13 C -0.178 4.178 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.185 4.185 17 N -0.559 5.559 18 Si 0.783 3.217 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.200 1.200 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.081 0.919 25 H 0.180 0.820 26 H 0.200 0.800 27 H 0.170 0.830 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.026 0.974 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.143 12.751 -4.272 14.784 hybrid contribution -0.806 -1.474 0.646 1.800 sum 5.337 11.276 -3.627 12.992 Atomic orbital electron populations 1.20744 0.89474 1.03020 1.02969 1.20453 0.97637 0.92390 0.93210 1.22337 0.95521 0.99086 1.02239 1.23219 0.92412 0.96489 0.94836 1.67682 1.41794 0.99042 1.13805 1.22711 0.91175 0.96540 0.96044 1.20720 0.94796 0.95790 1.02208 1.20958 0.97193 0.92345 0.92889 1.62117 1.19009 1.40369 1.03686 1.22087 0.93198 0.98140 0.96680 1.19069 0.89919 0.84613 0.95342 1.02041 1.21659 0.99442 1.00968 0.95719 1.21373 1.27864 1.10936 0.95471 0.92403 1.25661 0.96757 0.95672 1.00449 1.70006 1.36588 1.16324 1.32996 0.85631 0.78303 0.77486 0.80311 1.19663 1.21034 1.19961 0.91093 0.89498 0.91895 0.81973 0.80035 0.83044 0.95370 0.89620 0.97450 0.92144 0.92408 0.95053 0.92296 0.94483 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 9.49 71.24 0.68 -2.07 16 2 C -0.03 -0.78 5.92 -19.67 -0.12 -0.90 16 3 C -0.17 -3.81 9.80 22.36 0.22 -3.59 16 4 C 0.09 1.99 11.18 84.67 0.95 2.93 16 5 N -0.51 -14.66 10.36 -195.84 -2.03 -16.69 16 6 C 0.09 2.73 10.08 84.69 0.85 3.58 16 7 C -0.13 -4.08 4.33 -19.77 -0.09 -4.17 16 8 C 0.09 3.33 4.25 85.56 0.36 3.69 16 9 N -0.53 -21.91 4.53 -906.04 -4.11 -26.02 16 10 C 0.05 1.89 9.03 127.69 1.15 3.04 16 11 C 0.22 10.82 2.05 44.17 0.09 10.91 16 12 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 13 C -0.12 -5.64 8.75 71.98 0.63 -5.01 16 14 C -0.52 -28.06 7.98 25.60 0.20 -27.85 16 15 H 0.06 3.12 6.41 -2.91 -0.02 3.11 16 16 C 0.01 0.73 5.30 84.66 0.45 1.18 16 17 N -0.92 -52.32 11.32 21.45 0.24 -52.08 16 18 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.09 1.69 8.07 -2.39 -0.02 1.67 16 24 H 0.06 1.78 6.64 -2.39 -0.02 1.76 16 25 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 26 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 27 H 0.15 4.19 8.00 -2.91 -0.02 4.17 16 28 H 0.03 1.00 7.96 -2.39 -0.02 0.98 16 29 H 0.09 3.00 4.67 -2.38 -0.01 2.99 16 30 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 31 H 0.06 2.15 6.36 -2.38 -0.02 2.14 16 32 H 0.06 2.45 6.43 -2.38 -0.02 2.43 16 33 H 0.03 1.28 6.24 -2.39 -0.01 1.27 16 34 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 35 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -60.82 289.07 2.57 -58.24 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.06 Total: 9.46 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.38 Total: -18.26 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -5.89 Total: -94.79 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -60.82 2.57 -58.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269638391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.376 kcal (2) G-P(sol) polarization free energy of solvation -60.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds