Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46991 * 269.99573 * 3 2 1 5 5 H 1.48494 * 109.47334 * 30.00362 * 3 2 1 6 6 H 1.48506 * 109.46800 * 150.00039 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 O 1.42897 * 109.44774 * 181.25335 * 15 14 13 17 17 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 18 18 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 19 19 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 21 21 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 22 22 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 23 23 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 24 24 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 25 25 H 0.96700 * 114.00263 * 59.93923 * 16 15 14 26 26 H 1.08998 * 109.49686 * 178.67995 * 17 15 14 27 27 H 1.09001 * 109.49965 * 58.58641 * 17 15 14 28 28 H 1.08997 * 109.58689 * 246.15965 * 18 12 9 29 29 H 1.08998 * 109.58450 * 6.44081 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.7522 -4.4890 -1.2648 14 6 2.5725 -6.0059 -1.2505 15 6 3.2394 -6.5846 -0.0004 16 8 3.0974 -8.0065 -0.0004 17 6 2.5730 -6.0057 1.2497 18 6 2.7568 -4.4849 1.2636 19 1 -0.4849 0.8400 -0.0004 20 1 2.1931 -4.0640 -2.0985 21 1 3.8104 -4.2502 -1.3724 22 1 3.0320 -6.4364 -2.1403 23 1 1.5088 -6.2437 -1.2385 24 1 4.2981 -6.3254 -0.0006 25 1 3.4973 -8.4418 -0.7658 26 1 3.0327 -6.4359 2.1394 27 1 1.5093 -6.2434 1.2382 28 1 3.8153 -4.2457 1.3666 29 1 2.2024 -4.0553 2.0980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509539.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -149.522219 kcal Electronic energy + Delta-G solvation = -15577.747081 eV Core-core repulsion = 12819.868683 eV Total energy + Delta-G solvation = -2757.878398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.61212 -35.65517 -35.31219 -33.96225 -33.07776 -30.79966 -30.54010 -26.12121 -23.54780 -23.03708 -20.14068 -18.77296 -17.44823 -17.14301 -16.28095 -15.09725 -15.00488 -14.39950 -14.28786 -14.07638 -13.55533 -13.37388 -12.76093 -12.07450 -12.00997 -11.62739 -11.57074 -11.22906 -11.08960 -10.99933 -10.61020 -10.42125 -10.29416 -10.19976 -10.00874 -9.68225 -9.25388 -8.93350 -8.25077 -6.70149 -5.32611 2.24610 3.06065 3.12808 3.19236 4.04412 4.24688 4.52881 4.63319 4.96336 5.01554 5.28927 5.38116 5.62907 5.72981 5.78504 5.90682 5.97733 6.04934 6.13557 6.18167 6.31559 6.47061 6.53357 6.79961 7.31938 7.56489 7.67605 7.96938 8.88445 10.23412 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.049941 B = 0.007961 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.526392 B = 3516.202836 C = 3564.110810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.003 7.003 11 O -1.004 7.004 12 N -1.013 6.013 13 C 0.126 3.874 14 C -0.164 4.164 15 C 0.107 3.893 16 O -0.571 6.571 17 C -0.125 4.125 18 C 0.126 3.874 19 H 0.291 0.709 20 H 0.096 0.904 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.373 0.627 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.263 -8.605 -1.074 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.993 6.993 11 O -0.994 6.994 12 N -0.849 5.849 13 C -0.001 4.001 14 C -0.204 4.204 15 C 0.048 3.952 16 O -0.377 6.377 17 C -0.164 4.164 18 C 0.000 4.000 19 H 0.101 0.899 20 H 0.114 0.886 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.220 0.780 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.827 -8.531 -0.505 10.938 hybrid contribution 1.320 1.102 -0.601 1.822 sum 8.147 -7.429 -1.106 11.082 Atomic orbital electron populations 1.69902 1.06781 1.30739 1.40128 1.24766 0.94471 1.00826 0.88508 0.86158 0.80165 0.80042 0.79155 1.19202 1.19961 1.18675 1.30631 1.06126 1.11864 1.66793 0.87984 1.00510 0.72122 0.72961 0.72796 1.93347 1.72733 1.87563 1.45702 1.93343 1.72726 1.87579 1.45772 1.58223 1.62718 1.54301 1.09618 1.21079 0.99534 0.92277 0.87190 1.22557 1.02680 0.97268 0.97879 1.21789 0.98016 0.79766 0.95595 1.86519 1.82169 1.19798 1.49174 1.21872 1.02059 0.95786 0.96708 1.21212 0.99628 0.91998 0.87189 0.89878 0.88565 0.92326 0.91152 0.90735 0.92734 0.78028 0.90672 0.90842 0.92194 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.91 13.19 55.43 0.73 -24.18 15 2 C 0.13 3.69 5.46 -17.81 -0.10 3.59 15 3 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 7 C -1.02 -28.07 9.75 30.60 0.30 -27.78 15 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 15 9 S 2.71 72.10 5.01 -107.50 -0.54 71.56 15 10 O -1.00 -29.17 16.61 -57.17 -0.95 -30.12 15 11 O -1.00 -29.14 16.60 -57.17 -0.95 -30.09 15 12 N -1.01 -20.46 3.30 -113.77 -0.37 -20.83 15 13 C 0.13 2.11 6.45 -3.93 -0.03 2.09 15 14 C -0.16 -2.30 5.69 -26.83 -0.15 -2.45 15 15 C 0.11 1.43 3.43 -26.69 -0.09 1.34 15 16 O -0.57 -7.20 13.32 -35.23 -0.47 -7.67 15 17 C -0.13 -1.88 5.73 -26.61 -0.15 -2.04 15 18 C 0.13 2.16 6.48 -3.71 -0.02 2.13 15 19 H 0.29 7.69 8.31 -40.82 -0.34 7.35 15 20 H 0.10 1.75 6.91 -51.93 -0.36 1.39 15 21 H 0.06 0.84 8.14 -51.92 -0.42 0.42 15 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.37 2.96 9.08 45.56 0.41 3.37 15 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 15 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 29 H 0.10 1.83 6.92 -51.93 -0.36 1.47 15 LS Contribution 257.89 15.07 3.89 3.89 Total: -1.00 -35.10 257.89 -6.74 -41.84 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.81 Total: 3.22 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -0.25 Total: -23.12 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.36 Total: -45.01 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: -2.37 Total: -67.88 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 72.10 SS G_CDS: -0.54 Total: 71.56 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -35.10 -6.74 -41.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509539.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.681 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds