Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46991 * 269.99573 * 3 2 1 5 5 H 1.48494 * 109.47334 * 30.00362 * 3 2 1 6 6 H 1.48506 * 109.46800 * 150.00039 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 O 1.42897 * 109.44774 * 181.25335 * 15 14 13 17 17 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 18 18 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 19 19 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 21 21 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 22 22 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 23 23 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 24 24 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 25 25 H 0.96700 * 114.00263 * 59.93923 * 16 15 14 26 26 H 1.08998 * 109.49686 * 178.67995 * 17 15 14 27 27 H 1.09001 * 109.49965 * 58.58641 * 17 15 14 28 28 H 1.08997 * 109.58689 * 246.15965 * 18 12 9 29 29 H 1.08998 * 109.58450 * 6.44081 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.7522 -4.4890 -1.2648 14 6 2.5725 -6.0059 -1.2505 15 6 3.2394 -6.5846 -0.0004 16 8 3.0974 -8.0065 -0.0004 17 6 2.5730 -6.0057 1.2497 18 6 2.7568 -4.4849 1.2636 19 1 -0.4849 0.8400 -0.0004 20 1 2.1931 -4.0640 -2.0985 21 1 3.8104 -4.2502 -1.3724 22 1 3.0320 -6.4364 -2.1403 23 1 1.5088 -6.2437 -1.2385 24 1 4.2981 -6.3254 -0.0006 25 1 3.4973 -8.4418 -0.7658 26 1 3.0327 -6.4359 2.1394 27 1 1.5093 -6.2434 1.2382 28 1 3.8153 -4.2457 1.3666 29 1 2.2024 -4.0553 2.0980 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509539.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -180.064661 kcal Electronic energy + Delta-G solvation = -15579.071500 eV Core-core repulsion = 12819.868683 eV Total energy + Delta-G solvation = -2759.202818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79900 -37.48750 -36.83020 -36.14679 -35.17182 -32.07746 -31.82364 -28.25526 -24.85193 -24.30356 -21.45030 -20.74510 -19.08348 -18.49455 -18.04381 -17.05985 -16.64703 -15.99393 -15.50914 -15.36645 -15.25074 -14.97584 -14.06030 -13.98121 -13.43226 -13.34530 -13.01719 -12.93576 -12.73588 -12.53657 -12.45879 -12.30331 -12.09645 -11.81692 -11.36110 -11.25517 -10.96855 -10.74127 -9.82780 -8.74900 -7.49570 0.28969 1.33942 1.34552 1.50929 2.20414 2.57127 2.79721 3.30887 3.77295 3.81385 3.85445 4.10191 4.22323 4.38079 4.39882 4.47106 4.76126 4.80798 4.81153 4.87985 5.00963 5.13288 5.22164 5.34494 5.38666 5.90005 5.98249 6.77277 6.96590 8.20270 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.049941 B = 0.007961 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.526392 B = 3516.202836 C = 3564.110810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.246 1.246 7 C -1.040 5.040 8 H 0.121 0.879 9 S 2.715 3.285 10 O -1.042 7.042 11 O -1.042 7.042 12 N -1.011 6.011 13 C 0.115 3.885 14 C -0.160 4.160 15 C 0.114 3.886 16 O -0.583 6.583 17 C -0.126 4.126 18 C 0.119 3.881 19 H 0.299 0.701 20 H 0.074 0.926 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.047 0.953 24 H 0.084 0.916 25 H 0.395 0.605 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.173 -8.866 -1.349 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.810 3.190 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.169 1.169 7 C -1.173 5.173 8 H 0.139 0.861 9 S 2.818 3.182 10 O -1.033 7.033 11 O -1.032 7.032 12 N -0.850 5.850 13 C -0.010 4.010 14 C -0.199 4.199 15 C 0.055 3.945 16 O -0.392 6.392 17 C -0.166 4.166 18 C -0.006 4.006 19 H 0.109 0.891 20 H 0.092 0.908 21 H 0.112 0.888 22 H 0.128 0.872 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.246 0.754 26 H 0.117 0.883 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.735 -8.830 -0.793 13.167 hybrid contribution 0.435 1.053 -0.526 1.255 sum 10.170 -7.777 -1.319 12.870 Atomic orbital electron populations 1.70004 1.08874 1.32343 1.41545 1.26078 0.95382 1.05521 0.87511 0.85096 0.79142 0.74620 0.80095 1.17783 1.18807 1.16930 1.30992 1.07204 1.12560 1.66571 0.86088 1.00059 0.72845 0.73864 0.71410 1.93285 1.74610 1.88369 1.46989 1.93281 1.74556 1.88377 1.46988 1.57723 1.61983 1.53134 1.12169 1.21409 1.00909 0.93989 0.84714 1.22556 1.01712 0.95249 1.00417 1.21671 0.99004 0.80184 0.93625 1.86473 1.82768 1.19204 1.50722 1.21858 1.01063 0.94399 0.99233 1.21468 1.00985 0.93239 0.84926 0.89128 0.90752 0.88781 0.87178 0.93379 0.89824 0.75447 0.88345 0.93461 0.88677 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.05 13.19 21.45 0.28 -53.77 15 2 C 0.07 3.78 5.46 84.65 0.46 4.24 15 3 Si 0.99 41.13 29.54 68.60 2.03 43.16 15 4 H -0.25 -9.89 7.11 99.48 0.71 -9.18 15 5 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 15 7 C -1.04 -57.40 9.75 67.74 0.66 -56.74 15 8 H 0.12 5.97 7.81 -2.91 -0.02 5.94 15 9 S 2.72 148.46 5.01 -56.49 -0.28 148.18 15 10 O -1.04 -63.29 16.61 -128.00 -2.13 -65.41 15 11 O -1.04 -62.98 16.60 -128.00 -2.13 -65.10 15 12 N -1.01 -40.48 3.30 -513.86 -1.69 -42.18 15 13 C 0.11 3.68 6.45 86.22 0.56 4.23 15 14 C -0.16 -4.10 5.69 30.53 0.17 -3.93 15 15 C 0.11 2.65 3.43 30.62 0.11 2.76 15 16 O -0.58 -12.70 13.32 -148.98 -1.98 -14.68 15 17 C -0.13 -3.60 5.73 30.67 0.18 -3.42 15 18 C 0.12 3.93 6.48 86.36 0.56 4.49 15 19 H 0.30 16.15 8.31 -92.71 -0.77 15.38 15 20 H 0.07 2.70 6.91 -2.39 -0.02 2.68 15 21 H 0.09 2.36 8.14 -2.38 -0.02 2.34 15 22 H 0.11 1.95 8.14 -2.38 -0.02 1.93 15 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.40 4.65 9.08 -74.06 -0.67 3.98 15 26 H 0.10 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 28 H 0.10 2.48 8.14 -2.39 -0.02 2.46 15 29 H 0.08 2.88 6.92 -2.39 -0.02 2.86 15 Total: -1.00 -78.59 257.89 -2.72 -81.32 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.49 Total: 16.85 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 2.69 Total: -48.36 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -1.41 Total: -95.95 kcal Atomic # 8 Polarization: -138.96 SS G_CDS: -6.23 Total: -145.20 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 148.46 SS G_CDS: -0.28 Total: 148.18 kcal Total: -78.59 -2.72 -81.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509539.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.749 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds