Wall clock time and date at job start Sun Mar 29 2020 21:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 13 13 C 1.34868 * 116.99861 * 90.00260 * 12 2 1 14 14 O 1.21565 * 119.99842 * 359.97438 * 13 12 2 15 15 C 1.46852 * 119.99868 * 180.02562 * 13 12 2 16 16 C 1.37708 * 125.80381 * 179.97438 * 15 13 12 17 17 C 1.39929 * 106.84467 * 179.97438 * 16 15 13 18 18 C 1.37716 * 106.86839 * 359.97438 * 17 16 15 19 19 C 1.43197 * 125.78306 * 180.02562 * 18 17 16 20 20 N 7.79131 * 109.38064 * 233.79465 * 2 1 3 21 21 O 1.34498 * 108.43236 * 359.75737 * 18 17 16 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 26 26 H 1.07999 * 126.57884 * 359.96076 * 16 15 13 27 27 H 1.08000 * 126.56144 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 8 2.0140 -0.6845 -1.1855 13 6 2.2182 0.0675 -2.2862 14 8 1.9970 1.2625 -2.2555 15 6 2.7065 -0.5574 -3.5222 16 6 2.9548 0.0932 -4.7102 17 6 3.4034 -0.8742 -5.6162 18 6 3.4118 -2.0768 -4.9452 19 6 3.8045 -3.3395 -5.4946 20 7 4.1155 -4.3414 -5.9306 21 8 2.9944 -1.8633 -3.6846 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7081 1.1610 3.4844 26 1 2.8274 1.1477 -4.9054 27 1 3.6892 -0.7091 -6.6446 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796883073.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:06 Heat of formation + Delta-G solvation = -36.738303 kcal Electronic energy + Delta-G solvation = -15449.066377 eV Core-core repulsion = 12560.634706 eV Total energy + Delta-G solvation = -2888.431672 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.91756 -39.52566 -36.93101 -36.03124 -33.50768 -33.29609 -30.82459 -29.55435 -25.46722 -25.12246 -22.57637 -21.49959 -20.11838 -19.63292 -17.84246 -16.83653 -16.66467 -15.84820 -15.00858 -14.68444 -14.57503 -13.76786 -13.64756 -13.61930 -13.33065 -13.06239 -12.66090 -12.36856 -12.07128 -11.34726 -11.14071 -10.93011 -10.50172 -10.40312 -10.36891 -10.20678 -9.72320 -9.03986 -8.93114 -8.56184 -6.25241 -4.32727 0.36233 1.61365 1.67436 2.60186 2.96779 3.14112 3.16231 3.24108 3.27775 3.33241 3.92348 4.28286 4.45085 5.01452 5.08694 5.17044 5.36215 5.60003 5.93509 6.45949 6.51720 6.76441 6.79400 6.92822 6.95775 7.44434 7.60935 7.76902 8.02001 8.34260 8.75359 9.32841 10.82148 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.005682 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.442063 B = 4926.697187 C = 5508.712509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.052 0.948 4 C -0.525 4.525 5 H 0.070 0.930 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.914 3.086 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 O -0.340 6.340 13 C 0.535 3.465 14 O -0.485 6.485 15 C 0.006 3.994 16 C -0.133 4.133 17 C -0.130 4.130 18 C 0.057 3.943 19 C 0.293 3.707 20 N -0.374 5.374 21 O -0.123 6.123 22 H 0.039 0.961 23 H 0.018 0.982 24 H 0.103 0.897 25 H 0.268 0.732 26 H 0.177 0.823 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -1.234 -12.997 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.563 4.563 5 H 0.089 0.911 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.741 3.259 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.255 6.255 13 C 0.378 3.622 14 O -0.375 6.375 15 C -0.048 4.048 16 C -0.152 4.152 17 C -0.152 4.152 18 C 0.002 3.998 19 C -0.022 4.022 20 N -0.053 5.053 21 O -0.015 6.015 22 H 0.058 0.942 23 H 0.037 0.963 24 H 0.121 0.879 25 H 0.078 0.922 26 H 0.194 0.806 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.224 -2.523 -13.161 13.783 hybrid contribution 0.086 0.128 0.984 0.997 sum 3.310 -2.395 -12.177 12.844 Atomic orbital electron populations 1.22201 0.97105 1.00479 1.01706 1.20837 0.91699 0.94019 0.77081 0.93058 1.20975 1.32904 1.13742 0.88673 0.91145 1.24873 0.94811 0.95068 0.99062 1.69874 1.35780 1.22460 1.24490 0.86292 0.79267 0.79556 0.80809 1.19901 1.20966 1.19875 1.86690 1.75078 1.42903 1.20859 1.19216 0.75461 0.84697 0.82876 1.90907 1.48517 1.14573 1.83525 1.22025 1.06352 0.80377 0.96036 1.22174 1.01028 1.01813 0.90183 1.22094 1.02278 0.89367 1.01462 1.16937 1.08902 0.89659 0.84262 1.23469 0.93866 0.90483 0.94431 1.81339 1.08689 1.07822 1.07401 1.84241 1.62667 1.27149 1.27443 0.94157 0.96256 0.87911 0.92192 0.80563 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.33 37.16 0.35 -3.49 15 2 C 0.22 5.58 2.57 -27.88 -0.07 5.51 15 3 H 0.05 1.44 7.16 -51.93 -0.37 1.06 15 4 C -0.53 -14.42 8.90 -34.44 -0.31 -14.73 15 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -24.53 11.32 55.43 0.63 -23.90 15 8 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 15 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 12 O -0.34 -7.89 9.88 -42.44 -0.42 -8.31 15 13 C 0.54 10.65 7.92 34.22 0.27 10.92 15 14 O -0.48 -10.41 16.13 -19.31 -0.31 -10.73 15 15 C 0.01 0.09 7.21 -36.29 -0.26 -0.17 15 16 C -0.13 -1.47 10.64 -39.14 -0.42 -1.89 15 17 C -0.13 -1.15 10.85 -39.14 -0.42 -1.57 15 18 C 0.06 0.65 7.08 -37.85 -0.27 0.38 15 19 C 0.29 3.40 15.88 -22.47 -0.36 3.04 15 20 N -0.37 -4.87 18.54 41.84 0.78 -4.10 15 21 O -0.12 -1.82 10.68 3.79 0.04 -1.77 15 22 H 0.04 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 24 H 0.10 2.67 6.07 -51.93 -0.32 2.36 15 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 26 H 0.18 1.62 8.06 -52.49 -0.42 1.20 15 27 H 0.17 0.87 8.06 -52.49 -0.42 0.45 15 LS Contribution 264.83 15.07 3.99 3.99 Total: -1.00 -29.30 264.83 -3.82 -33.12 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: -1.92 Total: -3.65 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.58 Total: -0.35 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 1.40 Total: -28.00 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.69 Total: -20.81 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.30 -3.82 -33.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796883073.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.615 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds