Wall clock time and date at job start Sun Mar 29 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 O 1.45194 * 109.47339 * 239.99705 * 2 1 3 13 13 C 1.34868 * 116.99861 * 90.00260 * 12 2 1 14 14 O 1.21565 * 119.99842 * 359.97438 * 13 12 2 15 15 C 1.46852 * 119.99868 * 180.02562 * 13 12 2 16 16 C 1.37708 * 125.80381 * 179.97438 * 15 13 12 17 17 C 1.39929 * 106.84467 * 179.97438 * 16 15 13 18 18 C 1.37716 * 106.86839 * 359.97438 * 17 16 15 19 19 C 1.43197 * 125.78306 * 180.02562 * 18 17 16 20 20 N 7.79131 * 109.38064 * 233.79465 * 2 1 3 21 21 O 1.34498 * 108.43236 * 359.75737 * 18 17 16 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 26 26 H 1.07999 * 126.57884 * 359.96076 * 16 15 13 27 27 H 1.08000 * 126.56144 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 8 2.0140 -0.6845 -1.1855 13 6 2.2182 0.0675 -2.2862 14 8 1.9970 1.2625 -2.2555 15 6 2.7065 -0.5574 -3.5222 16 6 2.9548 0.0932 -4.7102 17 6 3.4034 -0.8742 -5.6162 18 6 3.4118 -2.0768 -4.9452 19 6 3.8045 -3.3395 -5.4946 20 7 4.1155 -4.3414 -5.9306 21 8 2.9944 -1.8633 -3.6846 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7081 1.1610 3.4844 26 1 2.8274 1.1477 -4.9054 27 1 3.6892 -0.7091 -6.6446 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796883073.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:05 Heat of formation + Delta-G solvation = -54.157785 kcal Electronic energy + Delta-G solvation = -15449.821743 eV Core-core repulsion = 12560.634706 eV Total energy + Delta-G solvation = -2889.187037 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.93508 -41.17883 -37.92471 -37.76039 -35.38191 -34.39177 -32.17552 -31.27085 -27.47892 -26.46981 -23.75785 -22.91149 -21.70089 -20.58571 -19.39958 -18.62098 -17.89954 -17.67132 -16.60211 -16.51165 -15.59210 -15.09317 -14.67597 -14.64418 -14.44661 -14.25200 -14.19945 -13.95231 -13.61086 -13.25167 -13.03313 -12.83049 -12.41051 -12.20237 -11.90349 -11.66257 -11.24659 -11.04992 -10.61409 -9.96098 -8.30284 -6.47079 -0.72040 0.59504 0.69435 1.41684 1.45520 1.51888 1.59182 1.75813 1.89127 2.05833 2.38150 2.85650 3.00693 3.60938 3.79488 4.18496 4.30473 4.50248 4.76422 4.77765 4.81612 5.06302 5.14455 5.43914 5.51555 5.58934 5.81980 5.99359 6.02574 6.52508 6.75696 7.23628 8.77092 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.005682 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.442063 B = 4926.697187 C = 5508.712509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.218 3.782 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.065 0.935 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.981 3.019 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.267 1.267 12 O -0.357 6.357 13 C 0.533 3.467 14 O -0.511 6.511 15 C -0.038 4.038 16 C -0.095 4.095 17 C -0.095 4.095 18 C 0.060 3.940 19 C 0.311 3.689 20 N -0.397 5.397 21 O -0.151 6.151 22 H 0.044 0.956 23 H 0.031 0.969 24 H 0.085 0.915 25 H 0.273 0.727 26 H 0.201 0.799 27 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -1.537 -14.554 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.165 3.835 3 H 0.038 0.962 4 C -0.592 4.592 5 H 0.083 0.917 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.804 3.196 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.191 1.191 12 O -0.273 6.273 13 C 0.378 3.622 14 O -0.403 6.403 15 C -0.091 4.091 16 C -0.114 4.114 17 C -0.116 4.116 18 C 0.006 3.994 19 C -0.004 4.004 20 N -0.076 5.076 21 O -0.045 6.045 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.218 0.782 27 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.967 -2.822 -14.746 15.529 hybrid contribution -0.102 0.218 1.305 1.327 sum 3.865 -2.604 -13.442 14.227 Atomic orbital electron populations 1.22026 0.96291 1.00569 1.01408 1.20520 0.92342 0.92413 0.78226 0.96190 1.21257 1.33804 1.14111 0.90023 0.91703 1.25758 0.94637 0.95643 1.01901 1.69980 1.36191 1.23404 1.25449 0.85265 0.78820 0.78575 0.76957 1.19362 1.19956 1.19148 1.86656 1.75888 1.43351 1.21394 1.19787 0.74638 0.84632 0.83178 1.90871 1.49819 1.15456 1.84110 1.21404 1.10907 0.81388 0.95369 1.22617 0.97349 1.03082 0.88346 1.22620 0.99357 0.86873 1.02772 1.17215 1.08319 0.90406 0.83488 1.23367 0.93138 0.90164 0.93731 1.81371 1.09509 1.08326 1.08345 1.84175 1.63950 1.27031 1.29325 0.93734 0.94976 0.89658 0.91791 0.78215 0.75973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.29 9.33 71.98 0.67 -6.62 15 2 C 0.22 11.74 2.57 29.85 0.08 11.82 15 3 H 0.02 1.19 7.16 -2.39 -0.02 1.18 15 4 C -0.55 -31.33 8.90 25.60 0.23 -31.10 15 5 H 0.06 3.63 7.81 -2.91 -0.02 3.60 15 6 C 0.02 1.14 5.30 84.65 0.45 1.59 15 7 N -0.91 -51.24 11.32 21.44 0.24 -51.00 15 8 Si 0.98 42.50 29.54 68.60 2.03 44.53 15 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 11 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 12 O -0.36 -17.24 9.88 -56.40 -0.56 -17.80 15 13 C 0.53 21.74 7.92 70.08 0.55 22.30 15 14 O -0.51 -22.52 16.13 19.62 0.32 -22.20 15 15 C -0.04 -1.13 7.21 24.40 0.18 -0.96 15 16 C -0.09 -1.79 10.64 22.55 0.24 -1.55 15 17 C -0.09 -1.23 10.85 22.56 0.24 -0.99 15 18 C 0.06 1.20 7.08 23.39 0.17 1.37 15 19 C 0.31 6.51 15.88 88.33 1.40 7.91 15 20 N -0.40 -9.64 18.54 19.00 0.35 -9.28 15 21 O -0.15 -4.33 10.68 -8.12 -0.09 -4.42 15 22 H 0.04 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.08 4.57 6.07 -2.38 -0.01 4.56 15 25 H 0.27 14.31 8.31 -92.70 -0.77 13.54 15 26 H 0.20 2.85 8.06 -2.91 -0.02 2.83 15 27 H 0.22 0.69 8.06 -2.91 -0.02 0.67 15 Total: -1.00 -66.05 264.83 7.71 -58.34 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: 1.21 Total: -1.93 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 4.21 Total: 3.77 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.60 Total: -60.28 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.33 Total: -44.42 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.05 7.71 -58.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796883073.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.179 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds