Wall clock time and date at job start Sun Mar 29 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00481 * 2 1 4 4 C 1.50698 * 109.47503 * 269.99945 * 3 2 1 5 5 H 1.08001 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00278 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00038 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99698 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47137 * 90.00642 * 8 6 4 10 10 H 1.48502 * 109.46776 * 210.00010 * 8 6 4 11 11 H 1.48491 * 109.47201 * 330.00017 * 8 6 4 12 12 C 1.39188 * 119.99568 * 179.97438 * 2 1 3 13 13 C 1.39427 * 120.83470 * 179.97438 * 12 2 1 14 14 C 1.38220 * 119.26838 * 180.02562 * 13 12 2 15 15 N 1.31654 * 120.99533 * 359.73768 * 14 13 12 16 16 C 1.32834 * 121.82355 * 0.52698 * 15 14 13 17 17 C 1.48185 * 119.68703 * 179.75119 * 16 15 14 18 18 N 1.34777 * 119.99789 * 0.02562 * 17 16 15 19 19 O 1.21513 * 119.99838 * 179.72728 * 17 16 15 20 20 C 1.39027 * 120.62049 * 359.47899 * 16 15 14 21 21 H 1.08992 * 109.46944 * 270.00433 * 1 2 3 22 22 H 1.09002 * 109.46611 * 29.99666 * 1 2 3 23 23 H 1.08996 * 109.47062 * 149.99597 * 1 2 3 24 24 H 1.09005 * 109.47010 * 29.99743 * 3 2 1 25 25 H 1.09003 * 109.47439 * 149.99443 * 3 2 1 26 26 H 0.96995 * 119.99671 * 179.97438 * 7 6 4 27 27 H 1.08007 * 120.36194 * 359.97438 * 13 12 2 28 28 H 1.08003 * 119.50334 * 180.02562 * 14 13 12 29 29 H 0.97004 * 119.99647 * 179.72022 * 18 17 16 30 30 H 0.97000 * 120.00483 * 359.72849 * 18 17 16 31 31 H 1.08008 * 120.51843 * 180.27576 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4489 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1263 2.8778 -1.6727 7 7 3.5528 3.6184 -0.6730 8 14 3.4370 3.4174 -3.4339 9 1 2.3068 4.2602 -3.9002 10 1 4.6972 4.2006 -3.4966 11 1 3.5543 2.2204 -4.3049 12 6 2.1609 -1.2055 0.0005 13 6 3.5550 -1.2259 0.0000 14 6 4.2130 -2.4414 0.0000 15 7 3.5434 -3.5749 0.0057 16 6 2.2153 -3.6038 0.0013 17 6 1.5097 -4.9069 0.0024 18 7 2.2152 -6.0552 0.0085 19 8 0.2950 -4.9400 0.0034 20 6 1.4813 -2.4232 0.0012 21 1 -0.3633 0.0001 1.0276 22 1 -0.3632 0.8901 -0.5138 23 1 -0.3633 -0.8899 -0.5139 24 1 1.6085 2.0283 0.5138 25 1 3.1500 1.1383 0.5139 26 1 4.0296 4.4442 -0.8503 27 1 4.1145 -0.3020 -0.0012 28 1 5.2929 -2.4616 0.0000 29 1 1.7532 -6.9082 0.0134 30 1 3.1848 -6.0289 0.0081 31 1 0.4015 -2.4487 0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035673144.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:23 Heat of formation + Delta-G solvation = -1.081757 kcal Electronic energy + Delta-G solvation = -16007.875533 eV Core-core repulsion = 13289.115891 eV Total energy + Delta-G solvation = -2718.759642 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.13286 -38.57266 -36.34417 -33.54951 -32.88522 -30.92734 -30.47231 -28.09148 -25.49182 -24.35446 -22.67462 -21.67535 -19.80810 -17.80294 -16.90586 -16.63072 -16.22902 -15.36972 -14.79056 -14.76332 -14.58459 -13.92612 -13.82024 -13.58395 -13.21713 -12.77946 -12.26209 -11.73101 -11.59427 -11.17962 -10.94497 -10.57675 -10.35839 -10.20219 -10.08753 -9.60787 -9.46186 -9.13644 -8.72421 -8.61510 -6.93855 -6.19182 -4.30140 1.19128 1.98585 3.11458 3.19987 3.27358 3.31369 3.55880 3.92382 4.30532 4.43625 4.63489 5.10428 5.20708 5.48015 5.69057 5.71904 5.92109 5.99766 6.04122 6.23073 6.32033 6.59210 6.79251 6.90021 7.09354 7.14122 7.43246 7.67514 7.95419 8.02289 8.14736 8.23555 8.48161 8.77763 9.37546 10.84126 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036224 B = 0.006070 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.790598 B = 4611.603789 C = 4862.616794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.598 5.598 3 C 0.245 3.755 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.261 3.739 13 C -0.217 4.217 14 C 0.127 3.873 15 N -0.523 5.523 16 C 0.098 3.902 17 C 0.582 3.418 18 N -0.840 5.840 19 O -0.546 6.546 20 C -0.204 4.204 21 H 0.043 0.957 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.266 0.734 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.399 0.601 30 H 0.412 0.588 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 -11.566 2.003 11.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.302 5.302 3 C 0.126 3.874 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.144 3.856 13 C -0.243 4.243 14 C -0.030 4.030 15 N -0.240 5.240 16 C -0.039 4.039 17 C 0.367 3.633 18 N -0.403 5.403 19 O -0.422 6.422 20 C -0.231 4.231 21 H 0.062 0.938 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.229 0.771 30 H 0.242 0.758 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.615 -11.777 2.059 11.971 hybrid contribution 0.079 1.031 -1.023 1.455 sum -0.536 -10.746 1.036 10.809 Atomic orbital electron populations 1.21623 0.80597 1.02631 1.00450 1.47147 1.05050 1.04414 1.73597 1.19421 0.92194 0.78333 0.97440 1.21519 1.36986 1.06761 0.92340 0.92141 1.24951 0.95188 0.96133 0.97591 1.69921 1.38010 1.14301 1.30877 0.86487 0.77805 0.78760 0.84396 1.20516 1.20973 1.19770 1.18072 0.91665 0.86364 0.89466 1.22018 0.93305 1.00643 1.08306 1.22286 0.99564 0.86823 0.94348 1.67425 1.07232 1.31034 1.18316 1.20430 0.90196 0.92374 1.00906 1.18050 0.86254 0.84049 0.74958 1.43634 1.12020 1.07653 1.76969 1.90780 1.13455 1.87575 1.50429 1.21479 1.01246 0.90690 1.09711 0.93819 0.90774 0.92156 0.94603 0.94350 0.92464 0.83558 0.82888 0.77078 0.75805 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 10.22 59.85 0.61 2.16 16 2 N -0.60 -12.26 2.98 -180.82 -0.54 -12.79 16 3 C 0.25 5.83 4.94 -5.20 -0.03 5.80 16 4 C -0.54 -14.03 9.39 -34.44 -0.32 -14.35 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.26 5.12 6.57 -83.63 -0.55 4.57 16 13 C -0.22 -4.05 9.27 -39.15 -0.36 -4.41 16 14 C 0.13 2.03 11.17 -17.63 -0.20 1.84 16 15 N -0.52 -8.49 9.54 -9.89 -0.09 -8.58 16 16 C 0.10 1.69 6.75 -83.05 -0.56 1.13 16 17 C 0.58 9.27 8.08 -12.17 -0.10 9.17 16 18 N -0.84 -9.45 8.86 30.61 0.27 -9.18 16 19 O -0.55 -10.17 17.15 5.35 0.09 -10.08 16 20 C -0.20 -3.73 8.78 -38.84 -0.34 -4.07 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 23 H 0.06 0.95 6.26 -51.93 -0.33 0.62 16 24 H 0.04 0.89 8.07 -51.93 -0.42 0.48 16 25 H 0.04 0.95 6.26 -51.93 -0.32 0.62 16 26 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.15 2.89 6.27 -52.48 -0.33 2.56 16 28 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.40 3.52 8.93 -40.82 -0.36 3.16 16 30 H 0.41 4.06 8.16 -40.82 -0.33 3.73 16 31 H 0.14 2.45 5.86 -52.48 -0.31 2.14 16 LS Contribution 273.50 15.07 4.12 4.12 Total: -1.00 -29.87 273.50 -5.59 -35.45 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.21 Total: 5.89 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -1.94 Total: 3.44 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.37 Total: -54.41 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.87 -5.59 -35.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035673144.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.373 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds