Wall clock time and date at job start Sun Mar 29 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00481 * 2 1 4 4 C 1.50698 * 109.47503 * 269.99945 * 3 2 1 5 5 H 1.08001 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00278 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00038 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99698 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47137 * 90.00642 * 8 6 4 10 10 H 1.48502 * 109.46776 * 210.00010 * 8 6 4 11 11 H 1.48491 * 109.47201 * 330.00017 * 8 6 4 12 12 C 1.39188 * 119.99568 * 179.97438 * 2 1 3 13 13 C 1.39427 * 120.83470 * 179.97438 * 12 2 1 14 14 C 1.38220 * 119.26838 * 180.02562 * 13 12 2 15 15 N 1.31654 * 120.99533 * 359.73768 * 14 13 12 16 16 C 1.32834 * 121.82355 * 0.52698 * 15 14 13 17 17 C 1.48185 * 119.68703 * 179.75119 * 16 15 14 18 18 N 1.34777 * 119.99789 * 0.02562 * 17 16 15 19 19 O 1.21513 * 119.99838 * 179.72728 * 17 16 15 20 20 C 1.39027 * 120.62049 * 359.47899 * 16 15 14 21 21 H 1.08992 * 109.46944 * 270.00433 * 1 2 3 22 22 H 1.09002 * 109.46611 * 29.99666 * 1 2 3 23 23 H 1.08996 * 109.47062 * 149.99597 * 1 2 3 24 24 H 1.09005 * 109.47010 * 29.99743 * 3 2 1 25 25 H 1.09003 * 109.47439 * 149.99443 * 3 2 1 26 26 H 0.96995 * 119.99671 * 179.97438 * 7 6 4 27 27 H 1.08007 * 120.36194 * 359.97438 * 13 12 2 28 28 H 1.08003 * 119.50334 * 180.02562 * 14 13 12 29 29 H 0.97004 * 119.99647 * 179.72022 * 18 17 16 30 30 H 0.97000 * 120.00483 * 359.72849 * 18 17 16 31 31 H 1.08008 * 120.51843 * 180.27576 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4489 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2416 6 6 3.1263 2.8778 -1.6727 7 7 3.5528 3.6184 -0.6730 8 14 3.4370 3.4174 -3.4339 9 1 2.3068 4.2602 -3.9002 10 1 4.6972 4.2006 -3.4966 11 1 3.5543 2.2204 -4.3049 12 6 2.1609 -1.2055 0.0005 13 6 3.5550 -1.2259 0.0000 14 6 4.2130 -2.4414 0.0000 15 7 3.5434 -3.5749 0.0057 16 6 2.2153 -3.6038 0.0013 17 6 1.5097 -4.9069 0.0024 18 7 2.2152 -6.0552 0.0085 19 8 0.2950 -4.9400 0.0034 20 6 1.4813 -2.4232 0.0012 21 1 -0.3633 0.0001 1.0276 22 1 -0.3632 0.8901 -0.5138 23 1 -0.3633 -0.8899 -0.5139 24 1 1.6085 2.0283 0.5138 25 1 3.1500 1.1383 0.5139 26 1 4.0296 4.4442 -0.8503 27 1 4.1145 -0.3020 -0.0012 28 1 5.2929 -2.4616 0.0000 29 1 1.7532 -6.9082 0.0134 30 1 3.1848 -6.0289 0.0081 31 1 0.4015 -2.4487 0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035673144.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:23 Heat of formation + Delta-G solvation = -22.846765 kcal Electronic energy + Delta-G solvation = -16008.819335 eV Core-core repulsion = 13289.115891 eV Total energy + Delta-G solvation = -2719.703444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.49259 -39.90214 -37.87116 -34.94623 -34.60380 -32.32198 -31.95532 -29.83007 -27.09488 -25.82769 -24.34806 -23.05731 -21.17855 -19.11022 -18.63570 -18.14217 -17.63234 -16.91866 -16.34361 -16.12730 -16.07609 -15.45225 -15.19112 -14.98729 -14.71204 -14.25244 -13.96270 -13.42449 -13.14324 -12.95548 -12.68963 -12.35966 -11.97971 -11.95701 -11.45634 -11.24264 -10.70467 -10.65139 -10.52296 -10.08850 -8.59447 -8.12266 -6.39236 -0.19366 0.57809 1.38691 1.40670 1.50630 1.81203 2.21977 2.39172 2.56021 3.04866 3.06199 3.43687 3.92745 4.05345 4.28081 4.31911 4.57263 4.61875 4.68046 4.84892 4.91906 4.98944 5.16155 5.26073 5.62710 5.67186 5.87379 6.01845 6.29484 6.34760 6.59154 6.76126 6.97546 7.30072 7.32523 8.81543 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036224 B = 0.006070 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.790598 B = 4611.603789 C = 4862.616794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.611 5.611 3 C 0.261 3.739 4 C -0.546 4.546 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.273 1.273 12 C 0.243 3.757 13 C -0.234 4.234 14 C 0.138 3.862 15 N -0.509 5.509 16 C 0.095 3.905 17 C 0.581 3.419 18 N -0.812 5.812 19 O -0.577 6.577 20 C -0.210 4.210 21 H 0.060 0.940 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.018 0.982 25 H 0.024 0.976 26 H 0.269 0.731 27 H 0.130 0.870 28 H 0.192 0.808 29 H 0.415 0.585 30 H 0.422 0.578 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 -13.085 1.389 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.317 5.317 3 C 0.140 3.860 4 C -0.585 4.585 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.198 1.198 12 C 0.128 3.872 13 C -0.260 4.260 14 C -0.019 4.019 15 N -0.226 5.226 16 C -0.042 4.042 17 C 0.364 3.636 18 N -0.375 5.375 19 O -0.457 6.457 20 C -0.237 4.237 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.147 0.853 28 H 0.208 0.792 29 H 0.248 0.752 30 H 0.254 0.746 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.026 -13.361 1.450 13.439 hybrid contribution -0.068 1.391 -0.796 1.604 sum -0.042 -11.970 0.653 11.988 Atomic orbital electron populations 1.21737 0.78902 1.02969 1.01669 1.47029 1.06104 1.03683 1.74879 1.18976 0.91558 0.79500 0.95925 1.21702 1.36880 1.06805 0.93068 0.93236 1.25682 0.94943 0.96172 1.01220 1.70012 1.38681 1.14731 1.32702 0.85531 0.77888 0.78242 0.79869 1.19954 1.20321 1.19755 1.18303 0.92239 0.86400 0.90254 1.22061 0.93120 1.01147 1.09689 1.22818 1.01189 0.85641 0.92216 1.67557 1.06651 1.30728 1.17628 1.20747 0.90624 0.92885 0.99989 1.17902 0.85842 0.84557 0.75252 1.43417 1.12476 1.07088 1.74565 1.90774 1.14679 1.87920 1.52296 1.21525 1.01488 0.90604 1.10082 0.92136 0.91340 0.90841 0.96404 0.95812 0.92238 0.85251 0.79164 0.75239 0.74600 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.08 10.22 127.77 1.31 4.39 16 2 N -0.61 -25.45 2.98 -726.00 -2.16 -27.61 16 3 C 0.26 12.78 4.94 85.63 0.42 13.20 16 4 C -0.55 -28.96 9.39 25.60 0.24 -28.72 16 5 H 0.05 2.69 7.81 -2.91 -0.02 2.66 16 6 C 0.02 1.06 5.46 84.65 0.46 1.52 16 7 N -0.92 -51.33 13.29 21.45 0.28 -51.04 16 8 Si 0.96 42.20 29.54 68.60 2.03 44.22 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 C 0.24 9.54 6.57 38.55 0.25 9.79 16 13 C -0.23 -8.68 9.27 22.55 0.21 -8.47 16 14 C 0.14 4.15 11.17 84.72 0.95 5.10 16 15 N -0.51 -15.24 9.54 -185.22 -1.77 -17.00 16 16 C 0.10 3.11 6.75 41.83 0.28 3.39 16 17 C 0.58 17.28 8.08 86.89 0.70 17.98 16 18 N -0.81 -15.87 8.86 -175.37 -1.55 -17.42 16 19 O -0.58 -20.71 17.15 -3.76 -0.06 -20.77 16 20 C -0.21 -7.53 8.78 22.75 0.20 -7.33 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 23 H 0.07 2.29 6.26 -2.39 -0.01 2.28 16 24 H 0.02 0.93 8.07 -2.38 -0.02 0.91 16 25 H 0.02 1.23 6.26 -2.39 -0.01 1.21 16 26 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.13 5.23 6.27 -2.91 -0.02 5.22 16 28 H 0.19 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.41 6.03 8.93 -92.71 -0.83 5.20 16 30 H 0.42 6.87 8.16 -92.71 -0.76 6.11 16 31 H 0.14 4.89 5.86 -2.91 -0.02 4.87 16 Total: -1.00 -63.42 273.50 1.38 -62.04 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.40 Total: 16.75 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.02 Total: 10.85 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -5.20 Total: -113.08 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.06 Total: -20.77 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -63.42 1.38 -62.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035673144.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.191 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds