Wall clock time and date at job start Sun Mar 29 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 119.99837 * 2 1 4 4 C 1.50702 * 109.47179 * 270.00261 * 3 2 1 5 5 H 1.07995 * 119.99977 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00294 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99522 * 0.02562 * 6 4 3 8 8 Si 1.86791 * 120.00184 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47334 * 89.99857 * 8 6 4 10 10 H 1.48498 * 109.47325 * 210.00110 * 8 6 4 11 11 H 1.48504 * 109.47236 * 330.00144 * 8 6 4 12 12 C 1.34775 * 119.99916 * 180.02562 * 2 1 3 13 13 O 1.21580 * 119.99952 * 179.97438 * 12 2 1 14 14 N 1.34780 * 120.00441 * 359.97438 * 12 2 1 15 15 C 1.39530 * 120.00070 * 184.64490 * 14 12 2 16 16 C 1.39398 * 120.85890 * 145.06560 * 15 14 12 17 17 C 1.37940 * 119.07877 * 179.97438 * 16 15 14 18 18 N 1.31980 * 120.83416 * 0.02562 * 17 16 15 19 19 C 1.31972 * 121.89274 * 359.95297 * 18 17 16 20 20 C 1.37945 * 120.83983 * 0.04501 * 19 18 17 21 21 H 1.09004 * 109.46531 * 269.99746 * 1 2 3 22 22 H 1.08999 * 109.47488 * 29.99659 * 1 2 3 23 23 H 1.09004 * 109.47007 * 150.00575 * 1 2 3 24 24 H 1.08997 * 109.47352 * 30.00144 * 3 2 1 25 25 H 1.09005 * 109.47090 * 150.00352 * 3 2 1 26 26 H 0.96998 * 119.99897 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99414 * 4.64245 * 14 12 2 28 28 H 1.08008 * 120.46169 * 359.69586 * 16 15 14 29 29 H 1.07996 * 119.58614 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.57950 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.46029 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5550 3.6171 -0.6732 8 14 3.4386 3.4164 -3.4339 9 1 2.3090 4.2596 -3.9010 10 1 4.6992 4.1988 -3.4963 11 1 3.5556 2.2191 -4.3047 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1672 -0.0010 14 7 1.4650 -2.3345 -0.0005 15 6 2.1594 -3.5408 0.0968 16 6 1.6192 -4.6228 0.7902 17 6 2.3371 -5.7984 0.8628 18 7 3.5199 -5.9054 0.2871 19 6 4.0646 -4.9044 -0.3783 20 6 3.4109 -3.6954 -0.4972 21 1 -0.3632 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8901 -0.5138 24 1 1.6084 2.0283 0.5138 25 1 3.1499 1.1383 0.5138 26 1 4.0324 4.4426 -0.8504 27 1 0.4974 -2.3358 -0.0681 28 1 0.6539 -4.5403 1.2677 29 1 1.9266 -6.6416 1.3983 30 1 5.0346 -5.0331 -0.8354 31 1 3.8625 -2.8801 -1.0429 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049028726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:48 Heat of formation + Delta-G solvation = 19.065849 kcal Electronic energy + Delta-G solvation = -16074.768382 eV Core-core repulsion = 13356.882406 eV Total energy + Delta-G solvation = -2717.885976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.56438 -39.05642 -35.37723 -34.71143 -32.66578 -31.05799 -30.44615 -27.79383 -25.96509 -23.81087 -23.34810 -22.18391 -19.70305 -18.21340 -17.14701 -16.62053 -15.82959 -15.70531 -15.22328 -14.72486 -14.37685 -13.83547 -13.73094 -13.46929 -13.14348 -12.80336 -12.25561 -12.00807 -11.72807 -11.26552 -10.97132 -10.63812 -10.63582 -10.21508 -9.77734 -9.68582 -9.19555 -8.97632 -8.49257 -8.44067 -7.75413 -6.09475 -4.14703 1.27387 1.42127 3.01454 3.26950 3.34151 3.38500 3.64908 4.05131 4.29652 4.44620 4.59196 4.93634 5.12753 5.24727 5.32767 5.37992 5.59453 5.74902 5.84523 5.97975 6.05416 6.27317 6.58458 6.68459 7.01566 7.25019 7.39034 7.54486 7.87293 8.13039 8.15956 8.42416 8.85089 9.08450 9.50760 10.98521 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037553 B = 0.005921 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.431516 B = 4728.186377 C = 5136.722050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.609 5.609 3 C 0.259 3.741 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.697 3.303 13 O -0.564 6.564 14 N -0.693 5.693 15 C 0.221 3.779 16 C -0.213 4.213 17 C 0.111 3.889 18 N -0.509 5.509 19 C 0.112 3.888 20 C -0.174 4.174 21 H 0.047 0.953 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.404 0.596 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -13.017 1.977 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.140 3.860 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.398 3.602 13 O -0.440 6.440 14 N -0.343 5.343 15 C 0.116 3.884 16 C -0.236 4.236 17 C -0.046 4.046 18 N -0.220 5.220 19 C -0.044 4.044 20 C -0.197 4.197 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.242 0.758 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.098 -13.443 2.093 14.909 hybrid contribution -0.933 1.328 -1.038 1.927 sum -7.032 -12.115 1.055 14.047 Atomic orbital electron populations 1.21622 0.81509 1.02476 1.00558 1.47534 1.05852 1.06264 1.74795 1.19295 0.92423 0.76681 0.97646 1.21430 1.36792 1.06366 0.92246 0.92465 1.24929 0.95241 0.96340 0.97515 1.69927 1.38198 1.14368 1.30778 0.86477 0.77723 0.78588 0.84510 1.20626 1.21022 1.19914 1.15935 0.85595 0.80025 0.78622 1.90900 1.11255 1.85408 1.56417 1.42952 1.10257 1.03669 1.77418 1.17835 0.92796 0.85107 0.92696 1.21861 1.03451 0.95000 1.03326 1.22446 0.90243 0.96050 0.95893 1.67656 1.11877 1.32366 1.10070 1.22644 0.99179 0.88059 0.94544 1.22457 0.95969 0.99828 1.01430 0.93467 0.90064 0.93177 0.94616 0.93581 0.92622 0.75810 0.84949 0.82904 0.82685 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.85 0.61 1.83 16 2 N -0.61 -12.58 2.86 -188.74 -0.54 -13.12 16 3 C 0.26 6.62 5.16 -5.20 -0.03 6.59 16 4 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.70 14.46 8.14 -86.92 -0.71 13.75 16 13 O -0.56 -14.03 13.41 5.30 0.07 -13.96 16 14 N -0.69 -10.86 5.22 -14.07 -0.07 -10.94 16 15 C 0.22 3.40 6.34 -83.49 -0.53 2.87 16 16 C -0.21 -2.60 10.06 -39.26 -0.39 -3.00 16 17 C 0.11 1.35 11.17 -17.60 -0.20 1.15 16 18 N -0.51 -7.28 10.36 -13.34 -0.14 -7.42 16 19 C 0.11 1.62 11.17 -17.60 -0.20 1.42 16 20 C -0.17 -2.87 8.77 -39.26 -0.34 -3.21 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 23 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 24 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 25 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 27 H 0.40 4.87 6.52 -40.82 -0.27 4.61 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 30 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.15 2.91 6.32 -52.49 -0.33 2.57 16 LS Contribution 273.04 15.07 4.11 4.11 Total: -1.00 -33.31 273.04 -6.44 -39.75 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -3.38 Total: 2.47 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -2.20 Total: 8.01 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.01 Total: -56.92 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.07 Total: -13.96 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.31 -6.44 -39.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049028726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.813 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds