Wall clock time and date at job start Sun Mar 29 2020 22:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 119.99837 * 2 1 4 4 C 1.50702 * 109.47179 * 270.00261 * 3 2 1 5 5 H 1.07995 * 119.99977 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00294 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99522 * 0.02562 * 6 4 3 8 8 Si 1.86791 * 120.00184 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47334 * 89.99857 * 8 6 4 10 10 H 1.48498 * 109.47325 * 210.00110 * 8 6 4 11 11 H 1.48504 * 109.47236 * 330.00144 * 8 6 4 12 12 C 1.34775 * 119.99916 * 180.02562 * 2 1 3 13 13 O 1.21580 * 119.99952 * 179.97438 * 12 2 1 14 14 N 1.34780 * 120.00441 * 359.97438 * 12 2 1 15 15 C 1.39530 * 120.00070 * 184.64490 * 14 12 2 16 16 C 1.39398 * 120.85890 * 145.06560 * 15 14 12 17 17 C 1.37940 * 119.07877 * 179.97438 * 16 15 14 18 18 N 1.31980 * 120.83416 * 0.02562 * 17 16 15 19 19 C 1.31972 * 121.89274 * 359.95297 * 18 17 16 20 20 C 1.37945 * 120.83983 * 0.04501 * 19 18 17 21 21 H 1.09004 * 109.46531 * 269.99746 * 1 2 3 22 22 H 1.08999 * 109.47488 * 29.99659 * 1 2 3 23 23 H 1.09004 * 109.47007 * 150.00575 * 1 2 3 24 24 H 1.08997 * 109.47352 * 30.00144 * 3 2 1 25 25 H 1.09005 * 109.47090 * 150.00352 * 3 2 1 26 26 H 0.96998 * 119.99897 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99414 * 4.64245 * 14 12 2 28 28 H 1.08008 * 120.46169 * 359.69586 * 16 15 14 29 29 H 1.07996 * 119.58614 * 179.97438 * 17 16 15 30 30 H 1.07998 * 119.57950 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.46029 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5550 3.6171 -0.6732 8 14 3.4386 3.4164 -3.4339 9 1 2.3090 4.2596 -3.9010 10 1 4.6992 4.1988 -3.4963 11 1 3.5556 2.2191 -4.3047 12 6 2.1389 -1.1672 -0.0005 13 8 3.3547 -1.1672 -0.0010 14 7 1.4650 -2.3345 -0.0005 15 6 2.1594 -3.5408 0.0968 16 6 1.6192 -4.6228 0.7902 17 6 2.3371 -5.7984 0.8628 18 7 3.5199 -5.9054 0.2871 19 6 4.0646 -4.9044 -0.3783 20 6 3.4109 -3.6954 -0.4972 21 1 -0.3632 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8901 -0.5138 24 1 1.6084 2.0283 0.5138 25 1 3.1499 1.1383 0.5138 26 1 4.0324 4.4426 -0.8504 27 1 0.4974 -2.3358 -0.0681 28 1 0.6539 -4.5403 1.2677 29 1 1.9266 -6.6416 1.3983 30 1 5.0346 -5.0331 -0.8354 31 1 3.8625 -2.8801 -1.0429 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049028726.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:47 Heat of formation + Delta-G solvation = -4.485511 kcal Electronic energy + Delta-G solvation = -16075.789646 eV Core-core repulsion = 13356.882406 eV Total energy + Delta-G solvation = -2718.907240 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.89459 -40.38202 -36.93602 -36.25094 -34.71313 -32.11999 -31.75860 -29.61239 -27.45140 -25.49349 -24.48772 -23.65492 -21.18831 -19.56314 -18.70682 -18.54083 -17.09115 -17.03639 -16.71508 -16.40866 -15.87893 -15.15966 -14.98898 -14.76995 -14.48849 -14.32750 -13.90704 -13.51853 -13.17620 -12.87385 -12.84520 -12.54428 -12.22035 -11.95574 -11.73205 -11.25788 -10.64640 -10.42095 -10.06559 -9.82868 -9.35396 -8.23223 -6.38044 0.20411 0.27661 1.36573 1.39583 1.49119 1.61330 2.10107 2.38211 2.92883 2.97102 3.07179 3.63384 3.92716 4.06170 4.24924 4.28717 4.50132 4.62114 4.76463 4.82365 4.94368 4.96637 5.14048 5.21439 5.42022 5.51232 5.73970 5.85449 5.98829 6.03610 6.70372 6.94968 7.06949 7.28715 7.52704 8.83583 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037553 B = 0.005921 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.431516 B = 4728.186377 C = 5136.722050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.274 3.726 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.692 3.308 13 O -0.617 6.617 14 N -0.671 5.671 15 C 0.197 3.803 16 C -0.194 4.194 17 C 0.114 3.886 18 N -0.521 5.521 19 C 0.109 3.891 20 C -0.201 4.201 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.032 0.968 25 H 0.000 1.000 26 H 0.268 0.732 27 H 0.424 0.576 28 H 0.173 0.827 29 H 0.196 0.804 30 H 0.170 0.830 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -14.665 1.856 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.351 5.351 3 C 0.153 3.847 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.200 1.200 12 C 0.394 3.606 13 O -0.496 6.496 14 N -0.323 5.323 15 C 0.092 3.908 16 C -0.216 4.216 17 C -0.043 4.043 18 N -0.232 5.232 19 C -0.046 4.046 20 C -0.224 4.224 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.050 0.950 25 H 0.018 0.982 26 H 0.077 0.923 27 H 0.265 0.735 28 H 0.190 0.810 29 H 0.213 0.787 30 H 0.187 0.813 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.270 -15.136 1.974 17.361 hybrid contribution -0.315 1.729 -0.929 1.988 sum -8.586 -13.407 1.045 15.955 Atomic orbital electron populations 1.21944 0.77670 1.04088 1.02892 1.47387 1.08147 1.04739 1.74875 1.18741 0.91007 0.78857 0.96107 1.21694 1.37001 1.06534 0.93023 0.92975 1.25820 0.94839 0.96409 1.01865 1.70042 1.38818 1.14842 1.32981 0.85418 0.78110 0.78133 0.79146 1.18717 1.20679 1.20017 1.16119 0.85114 0.81165 0.78248 1.90869 1.13807 1.86383 1.58535 1.42529 1.10941 1.02221 1.76591 1.18142 0.92888 0.85716 0.94049 1.22216 1.04604 0.93341 1.01451 1.23203 0.89228 0.97194 0.94679 1.67746 1.13119 1.32017 1.10331 1.22812 0.99750 0.87457 0.94616 1.22314 0.97328 0.99796 1.02934 0.90680 0.90623 0.89458 0.95013 0.98171 0.92342 0.73499 0.80968 0.78725 0.81290 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 10.24 127.77 1.31 3.39 16 2 N -0.62 -25.63 2.86 -869.32 -2.48 -28.11 16 3 C 0.27 14.58 5.16 85.64 0.44 15.02 16 4 C -0.54 -30.98 9.39 25.60 0.24 -30.74 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.56 5.46 84.66 0.46 1.03 16 7 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 8 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 C 0.69 29.17 8.14 179.05 1.46 30.63 16 13 O -0.62 -32.32 13.41 -3.97 -0.05 -32.38 16 14 N -0.67 -20.17 5.22 -316.69 -1.65 -21.82 16 15 C 0.20 5.80 6.34 38.47 0.24 6.05 16 16 C -0.19 -4.02 10.06 22.48 0.23 -3.79 16 17 C 0.11 2.33 11.17 84.60 0.95 3.28 16 18 N -0.52 -13.85 10.36 -196.11 -2.03 -15.88 16 19 C 0.11 3.14 11.17 84.60 0.95 4.09 16 20 C -0.20 -6.78 8.77 22.48 0.20 -6.58 16 21 H 0.07 1.66 8.14 -2.38 -0.02 1.65 16 22 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 23 H 0.09 1.72 6.30 -2.39 -0.02 1.70 16 24 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 25 H 0.00 0.01 7.42 -2.38 -0.02 -0.01 16 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.42 8.92 6.52 -92.71 -0.60 8.32 16 28 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.17 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.12 4.87 6.32 -2.91 -0.02 4.85 16 Total: -1.00 -76.01 273.04 3.10 -72.91 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.54 Total: 11.54 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 6.47 Total: 22.37 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -5.88 Total: -121.06 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.05 Total: -32.38 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -76.01 3.10 -72.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049028726.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.428 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds