Wall clock time and date at job start Sun Mar 29 2020 22:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99890 * 2 1 4 4 C 1.50704 * 109.47220 * 270.00334 * 3 2 1 5 5 H 1.07999 * 119.99769 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99782 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00135 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99692 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47396 * 59.99666 * 8 6 4 10 10 H 1.48503 * 109.47152 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47222 * 299.99539 * 8 6 4 12 12 C 1.34772 * 120.00362 * 180.02562 * 2 1 3 13 13 O 1.21573 * 120.00018 * 180.02562 * 12 2 1 14 14 N 1.34775 * 119.99671 * 359.97438 * 12 2 1 15 15 C 1.39401 * 119.99724 * 185.08614 * 14 12 2 16 16 C 1.39042 * 119.69433 * 174.81695 * 15 14 12 17 17 C 1.38347 * 119.10127 * 179.97438 * 16 15 14 18 18 C 1.38851 * 118.49780 * 0.02562 * 17 16 15 19 19 C 1.38064 * 119.30794 * 0.26774 * 18 17 16 20 20 N 1.31944 * 120.84670 * 359.45390 * 19 18 17 21 21 H 1.08993 * 109.47647 * 270.00102 * 1 2 3 22 22 H 1.09005 * 109.47602 * 30.00481 * 1 2 3 23 23 H 1.09001 * 109.47184 * 149.99665 * 1 2 3 24 24 H 1.09004 * 109.46949 * 30.00059 * 3 2 1 25 25 H 1.08996 * 109.47321 * 149.99695 * 3 2 1 26 26 H 0.97003 * 120.00295 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99961 * 5.09483 * 14 12 2 28 28 H 1.08001 * 120.45025 * 0.02635 * 16 15 14 29 29 H 1.08002 * 120.75749 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.34315 * 179.97438 * 18 17 16 31 31 H 1.07996 * 119.57427 * 179.72448 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4386 3.4165 -3.4338 9 1 2.1413 3.5944 -4.1342 10 1 4.1810 4.7027 -3.4339 11 1 4.2411 2.3814 -4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3546 -1.1670 -0.0001 14 7 1.4650 -2.3343 -0.0005 15 6 2.1580 -3.5392 0.1060 16 6 1.4524 -4.7323 0.2142 17 6 2.1525 -5.9210 0.3187 18 6 3.5403 -5.8753 0.3118 19 6 4.1757 -4.6540 0.2074 20 7 3.4814 -3.5368 0.1038 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6083 2.0284 0.5139 25 1 3.1498 1.1385 0.5139 26 1 4.0309 4.4436 -0.8503 27 1 0.4979 -2.3360 -0.0747 28 1 0.3724 -4.7313 0.2159 29 1 1.6316 -6.8632 0.4037 30 1 4.1165 -6.7851 0.3922 31 1 5.2549 -4.6130 0.2062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049028751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:41 Heat of formation + Delta-G solvation = 33.584310 kcal Electronic energy + Delta-G solvation = -16087.441197 eV Core-core repulsion = 13370.184788 eV Total energy + Delta-G solvation = -2717.256409 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46930 -38.83050 -34.99158 -34.35662 -32.52762 -32.19767 -29.80912 -27.65618 -25.81042 -23.84170 -23.35677 -22.08608 -19.44845 -18.15265 -16.94165 -16.48642 -16.06706 -15.46130 -15.10109 -14.82556 -14.25052 -13.84526 -13.67906 -13.08590 -12.87189 -12.55580 -12.17006 -11.94198 -11.82538 -11.16258 -10.90526 -10.53553 -10.46241 -10.10993 -9.71735 -9.65910 -9.55802 -8.62095 -8.38950 -8.07595 -7.56485 -5.99833 -4.04387 1.28928 1.48528 3.03728 3.35117 3.39514 3.43634 3.79748 4.27788 4.34053 4.51143 4.73946 4.90626 5.14519 5.20254 5.30760 5.34503 5.52165 5.78232 5.86134 5.97608 6.13571 6.25478 6.49952 6.70945 7.06762 7.32955 7.54917 7.62814 7.97333 8.26877 8.28144 8.68670 8.96620 9.36059 9.61170 11.08042 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037605 B = 0.005926 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.406016 B = 4723.667129 C = 5060.501562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.616 5.616 3 C 0.261 3.739 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.685 3.315 13 O -0.521 6.521 14 N -0.677 5.677 15 C 0.391 3.609 16 C -0.223 4.223 17 C -0.048 4.048 18 C -0.224 4.224 19 C 0.136 3.864 20 N -0.471 5.471 21 H 0.044 0.956 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.264 0.736 27 H 0.407 0.593 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -16.398 2.570 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.353 5.353 3 C 0.142 3.858 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.386 3.614 13 O -0.391 6.391 14 N -0.327 5.327 15 C 0.158 3.842 16 C -0.247 4.247 17 C -0.075 4.075 18 C -0.246 4.246 19 C -0.023 4.023 20 N -0.186 5.186 21 H 0.063 0.937 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.245 0.755 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.825 -15.202 2.550 16.478 hybrid contribution -0.899 -0.437 -1.001 1.415 sum -6.723 -15.639 1.548 17.093 Atomic orbital electron populations 1.21578 0.81917 1.02219 1.00296 1.47562 1.05583 1.06307 1.75835 1.19232 0.92398 0.76784 0.97428 1.21425 1.36559 1.06194 0.92387 0.92593 1.24918 0.95330 0.96385 0.97399 1.69919 1.38390 1.14381 1.30755 0.86556 0.78308 0.77783 0.84738 1.20328 1.21168 1.20204 1.16045 0.85905 0.79889 0.79575 1.91014 1.10534 1.84555 1.52954 1.43225 1.10155 1.03766 1.75540 1.18337 0.88974 0.84926 0.91988 1.21376 1.00738 0.91948 1.10661 1.21242 0.94141 0.97475 0.94597 1.21971 0.95266 0.99515 1.07807 1.22738 1.00294 0.86871 0.92398 1.67827 1.05795 1.30335 1.14609 0.93710 0.90277 0.93423 0.94778 0.93655 0.92675 0.75543 0.85102 0.85003 0.85224 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.25 59.84 0.61 1.94 16 2 N -0.62 -13.54 2.86 -188.75 -0.54 -14.08 16 3 C 0.26 7.00 5.16 -5.19 -0.03 6.97 16 4 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 C 0.69 15.52 8.24 -86.92 -0.72 14.80 16 13 O -0.52 -14.30 14.18 5.30 0.08 -14.23 16 14 N -0.68 -11.66 5.27 -15.81 -0.08 -11.74 16 15 C 0.39 6.59 7.42 -154.71 -1.15 5.44 16 16 C -0.22 -2.72 9.94 -39.24 -0.39 -3.11 16 17 C -0.05 -0.51 10.17 -39.31 -0.40 -0.91 16 18 C -0.22 -2.51 10.11 -39.42 -0.40 -2.91 16 19 C 0.14 1.99 11.17 -17.57 -0.20 1.79 16 20 N -0.47 -9.06 7.89 -12.37 -0.10 -9.16 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 23 H 0.05 0.59 6.29 -51.93 -0.33 0.26 16 24 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 25 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 27 H 0.41 5.26 6.39 -40.82 -0.26 5.00 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -36.43 274.38 -7.35 -43.77 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.47 Total: 0.19 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -3.08 Total: 10.11 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.02 Total: -61.26 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.23 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -36.43 -7.35 -43.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049028751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.359 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds