Wall clock time and date at job start Sun Mar 29 2020 22:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99890 * 2 1 4 4 C 1.50704 * 109.47220 * 270.00334 * 3 2 1 5 5 H 1.07999 * 119.99769 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99782 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00135 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99692 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47396 * 59.99666 * 8 6 4 10 10 H 1.48503 * 109.47152 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47222 * 299.99539 * 8 6 4 12 12 C 1.34772 * 120.00362 * 180.02562 * 2 1 3 13 13 O 1.21573 * 120.00018 * 180.02562 * 12 2 1 14 14 N 1.34775 * 119.99671 * 359.97438 * 12 2 1 15 15 C 1.39401 * 119.99724 * 185.08614 * 14 12 2 16 16 C 1.39042 * 119.69433 * 174.81695 * 15 14 12 17 17 C 1.38347 * 119.10127 * 179.97438 * 16 15 14 18 18 C 1.38851 * 118.49780 * 0.02562 * 17 16 15 19 19 C 1.38064 * 119.30794 * 0.26774 * 18 17 16 20 20 N 1.31944 * 120.84670 * 359.45390 * 19 18 17 21 21 H 1.08993 * 109.47647 * 270.00102 * 1 2 3 22 22 H 1.09005 * 109.47602 * 30.00481 * 1 2 3 23 23 H 1.09001 * 109.47184 * 149.99665 * 1 2 3 24 24 H 1.09004 * 109.46949 * 30.00059 * 3 2 1 25 25 H 1.08996 * 109.47321 * 149.99695 * 3 2 1 26 26 H 0.97003 * 120.00295 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99961 * 5.09483 * 14 12 2 28 28 H 1.08001 * 120.45025 * 0.02635 * 16 15 14 29 29 H 1.08002 * 120.75749 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.34315 * 179.97438 * 18 17 16 31 31 H 1.07996 * 119.57427 * 179.72448 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4386 3.4165 -3.4338 9 1 2.1413 3.5944 -4.1342 10 1 4.1810 4.7027 -3.4339 11 1 4.2411 2.3814 -4.1336 12 6 2.1389 -1.1671 -0.0005 13 8 3.3546 -1.1670 -0.0001 14 7 1.4650 -2.3343 -0.0005 15 6 2.1580 -3.5392 0.1060 16 6 1.4524 -4.7323 0.2142 17 6 2.1525 -5.9210 0.3187 18 6 3.5403 -5.8753 0.3118 19 6 4.1757 -4.6540 0.2074 20 7 3.4814 -3.5368 0.1038 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6083 2.0284 0.5139 25 1 3.1498 1.1385 0.5139 26 1 4.0309 4.4436 -0.8503 27 1 0.4979 -2.3360 -0.0747 28 1 0.3724 -4.7313 0.2159 29 1 1.6316 -6.8632 0.4037 30 1 4.1165 -6.7851 0.3922 31 1 5.2549 -4.6130 0.2062 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049028751.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:41 Heat of formation + Delta-G solvation = 7.733676 kcal Electronic energy + Delta-G solvation = -16088.562164 eV Core-core repulsion = 13370.184788 eV Total energy + Delta-G solvation = -2718.377376 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.77101 -40.24784 -36.68049 -35.92438 -34.62540 -33.23850 -31.07275 -29.51233 -27.37518 -25.47003 -24.53704 -23.55477 -20.97041 -19.51185 -18.67434 -18.38988 -17.12849 -16.76821 -16.62447 -16.54285 -15.81867 -15.12827 -15.05698 -14.72212 -14.23027 -13.84552 -13.82203 -13.46960 -13.18728 -12.84538 -12.74677 -12.53610 -12.17816 -11.85552 -11.66029 -11.22682 -10.73732 -10.63595 -9.93051 -9.53839 -9.08482 -8.21054 -6.36261 0.25532 0.52924 1.35789 1.40919 1.47769 1.63702 2.25513 2.40249 2.96928 3.07973 3.08689 3.69309 4.02573 4.21969 4.27844 4.32128 4.46256 4.64980 4.81015 4.87351 4.96365 5.10578 5.21837 5.34211 5.43409 5.55076 5.76232 5.95336 5.99769 6.06971 6.71781 6.89766 7.29695 7.38267 7.75393 8.85342 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037605 B = 0.005926 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.406016 B = 4723.667129 C = 5060.501562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.277 3.723 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.282 1.282 12 C 0.682 3.318 13 O -0.584 6.584 14 N -0.661 5.661 15 C 0.346 3.654 16 C -0.203 4.203 17 C -0.043 4.043 18 C -0.201 4.201 19 C 0.102 3.898 20 N -0.537 5.537 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.031 0.969 25 H -0.004 1.004 26 H 0.268 0.732 27 H 0.427 0.573 28 H 0.170 0.830 29 H 0.181 0.819 30 H 0.168 0.832 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 -18.961 1.768 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.360 5.360 3 C 0.155 3.845 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.208 1.208 12 C 0.382 3.618 13 O -0.459 6.459 14 N -0.314 5.314 15 C 0.114 3.886 16 C -0.226 4.226 17 C -0.069 4.069 18 C -0.222 4.222 19 C -0.055 4.055 20 N -0.252 5.252 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.049 0.951 25 H 0.014 0.986 26 H 0.077 0.923 27 H 0.268 0.732 28 H 0.187 0.813 29 H 0.199 0.801 30 H 0.185 0.815 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.048 -17.832 1.757 19.643 hybrid contribution -0.229 0.186 -0.684 0.744 sum -8.277 -17.646 1.073 19.520 Atomic orbital electron populations 1.21899 0.77917 1.03942 1.02633 1.47433 1.07997 1.04754 1.75839 1.18674 0.90846 0.78983 0.95972 1.21681 1.37047 1.06486 0.93054 0.93181 1.25844 0.94806 0.96376 1.02020 1.70040 1.38843 1.14812 1.33059 0.85466 0.78872 0.77276 0.79144 1.18265 1.20074 1.20794 1.16278 0.85399 0.81156 0.78946 1.90958 1.13445 1.85804 1.55713 1.42785 1.10836 1.02417 1.75342 1.18754 0.88947 0.85819 0.95035 1.21779 1.02571 0.90425 1.07870 1.21865 0.93834 0.98702 0.92483 1.22386 0.96280 0.99226 1.04336 1.22999 1.00791 0.87504 0.94187 1.67578 1.07927 1.33279 1.16461 0.90977 0.90735 0.89539 0.95105 0.98618 0.92343 0.73197 0.81295 0.80132 0.81470 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.25 127.77 1.31 3.66 16 2 N -0.62 -28.15 2.86 -869.34 -2.48 -30.63 16 3 C 0.28 15.62 5.16 85.63 0.44 16.07 16 4 C -0.54 -32.58 9.39 25.60 0.24 -32.34 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.51 5.46 84.66 0.46 0.97 16 7 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 8 Si 0.97 46.28 29.54 68.60 2.03 48.30 16 9 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 12 C 0.68 32.00 8.24 179.06 1.47 33.47 16 13 O -0.58 -34.28 14.18 -3.95 -0.06 -34.34 16 14 N -0.66 -22.53 5.27 -322.21 -1.70 -24.23 16 15 C 0.35 11.46 7.42 132.92 0.99 12.45 16 16 C -0.20 -4.23 9.94 22.49 0.22 -4.01 16 17 C -0.04 -0.70 10.17 22.44 0.23 -0.47 16 18 C -0.20 -3.87 10.11 22.38 0.23 -3.65 16 19 C 0.10 3.00 11.17 84.63 0.95 3.95 16 20 N -0.54 -21.35 7.89 -193.05 -1.52 -22.87 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 23 H 0.09 1.89 6.29 -2.39 -0.02 1.88 16 24 H 0.03 1.73 8.07 -2.38 -0.02 1.71 16 25 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 26 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.43 10.13 6.39 -92.71 -0.59 9.53 16 28 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -86.27 274.38 3.64 -82.63 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.55 Total: 8.29 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 6.54 Total: 30.10 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -5.42 Total: -134.98 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.06 Total: -34.34 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -86.27 3.64 -82.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049028751.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.362 kcal (2) G-P(sol) polarization free energy of solvation -86.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds