Wall clock time and date at job start Sun Mar 29 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 120.00001 * 2 1 4 4 C 1.50709 * 109.47260 * 269.99924 * 3 2 1 5 5 H 1.08001 * 119.99610 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00132 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00199 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99758 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47343 * 89.99694 * 8 6 4 10 10 H 1.48506 * 109.46910 * 209.99532 * 8 6 4 11 11 H 1.48497 * 109.47436 * 329.99197 * 8 6 4 12 12 C 1.34779 * 120.00065 * 179.97438 * 2 1 3 13 13 O 1.21508 * 119.99844 * 182.02892 * 12 2 1 14 14 C 1.48186 * 119.99727 * 2.03165 * 12 2 1 15 15 C 1.39037 * 119.68755 * 172.78310 * 14 12 2 16 16 C 1.39449 * 118.95451 * 179.70189 * 15 14 12 17 17 N 1.39199 * 120.82951 * 180.25333 * 16 15 14 18 18 C 1.39413 * 118.33637 * 0.27798 * 16 15 14 19 19 C 1.38225 * 119.26733 * 0.02562 * 18 16 15 20 20 N 1.31646 * 120.99377 * 359.97438 * 19 18 16 21 21 H 1.09005 * 109.47254 * 263.76867 * 1 2 3 22 22 H 1.09003 * 109.47216 * 23.76394 * 1 2 3 23 23 H 1.08998 * 109.47441 * 143.76564 * 1 2 3 24 24 H 1.08994 * 109.47491 * 29.99745 * 3 2 1 25 25 H 1.09008 * 109.47366 * 150.00192 * 3 2 1 26 26 H 0.97001 * 120.00097 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.51929 * 359.97438 * 15 14 12 28 28 H 0.96996 * 119.99907 * 0.02562 * 17 16 15 29 29 H 0.96992 * 119.99772 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.36692 * 179.97438 * 18 16 15 31 31 H 1.07997 * 119.50613 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4376 3.4169 -3.4340 9 1 2.3078 4.2605 -3.9000 10 1 4.6983 4.1993 -3.4969 11 1 3.5539 2.2201 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3534 -1.1675 0.0378 14 6 1.3986 -2.4501 -0.0444 15 6 2.0967 -3.6430 -0.1954 16 6 1.3852 -4.8419 -0.2295 17 7 2.0449 -6.0591 -0.3738 18 6 -0.0034 -4.7908 -0.1158 19 6 -0.6252 -3.5644 0.0252 20 7 0.0739 -2.4492 0.0540 21 1 -0.3634 -0.1115 1.0216 22 1 -0.3634 0.9406 -0.4141 23 1 -0.3634 -0.8289 -0.6074 24 1 1.6084 2.0284 0.5137 25 1 3.1499 1.1384 0.5138 26 1 4.0310 4.4435 -0.8505 27 1 3.1733 -3.6415 -0.2805 28 1 3.0115 -6.0805 -0.4519 29 1 1.5381 -6.8858 -0.3957 30 1 -0.5868 -5.6994 -0.1385 31 1 -1.7006 -3.5203 0.1132 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050696002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:26 Heat of formation + Delta-G solvation = 17.693900 kcal Electronic energy + Delta-G solvation = -16098.267994 eV Core-core repulsion = 13380.322526 eV Total energy + Delta-G solvation = -2717.945468 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.32405 -38.26444 -35.50195 -34.66519 -32.52127 -31.12966 -29.80385 -27.66477 -25.77953 -24.25715 -22.97601 -22.23063 -19.28146 -17.52723 -17.00947 -16.43695 -16.01093 -15.51403 -15.12425 -14.70233 -14.41589 -14.13908 -13.78777 -13.45397 -12.75448 -12.18941 -11.98603 -11.87286 -11.58878 -11.44027 -11.10844 -10.83813 -10.50285 -10.10647 -9.59772 -9.36381 -9.02713 -8.65440 -8.37388 -8.11757 -7.47582 -5.98061 -4.02654 0.99134 1.54219 3.34862 3.39067 3.41347 3.46940 3.52437 3.99771 4.30169 4.49077 4.58105 4.89454 5.01948 5.31087 5.35323 5.51629 5.73729 5.94107 6.02967 6.25830 6.41244 6.51932 6.88422 7.15555 7.19138 7.46172 7.51268 7.64976 7.97866 8.09301 8.29844 8.52259 8.95118 9.13925 9.61978 11.09947 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038494 B = 0.005999 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.220184 B = 4666.679258 C = 4878.279008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.576 5.576 3 C 0.241 3.759 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.551 3.449 13 O -0.540 6.540 14 C 0.135 3.865 15 C -0.193 4.193 16 C 0.242 3.758 17 N -0.866 5.866 18 C -0.245 4.245 19 C 0.129 3.871 20 N -0.490 5.490 21 H 0.042 0.958 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.035 0.965 25 H 0.045 0.955 26 H 0.263 0.737 27 H 0.143 0.857 28 H 0.403 0.597 29 H 0.400 0.600 30 H 0.130 0.870 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -17.590 1.290 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.305 5.305 3 C 0.122 3.878 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.335 3.665 13 O -0.418 6.418 14 C -0.002 4.002 15 C -0.219 4.219 16 C 0.129 3.871 17 N -0.406 5.406 18 C -0.271 4.271 19 C -0.029 4.029 20 N -0.206 5.206 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.115 0.885 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.231 0.769 29 H 0.229 0.771 30 H 0.148 0.852 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.952 -16.505 1.453 18.378 hybrid contribution 0.694 -0.838 -1.110 1.554 sum -7.257 -17.344 0.343 18.804 Atomic orbital electron populations 1.22189 0.79882 1.02786 1.01314 1.48059 1.07390 1.06997 1.68056 1.19393 0.92705 0.78073 0.97617 1.21442 1.36330 1.06321 0.92229 0.92411 1.24932 0.95374 0.96369 0.97442 1.69939 1.38504 1.14315 1.30695 0.86483 0.77629 0.78558 0.84674 1.20616 1.21105 1.19928 1.17833 0.86657 0.82918 0.79050 1.90734 1.12938 1.86650 1.51494 1.21374 0.89710 0.94163 0.94985 1.21540 1.01806 0.90566 1.07983 1.17912 0.91743 0.86539 0.90885 1.42346 1.10039 1.05086 1.83109 1.21643 0.92846 1.00235 1.12329 1.22644 1.00233 0.87169 0.92884 1.68303 1.06803 1.29257 1.16193 0.93901 0.92394 0.88501 0.94667 0.93710 0.92751 0.83921 0.76850 0.77146 0.85248 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 9.30 59.84 0.56 2.12 16 2 N -0.58 -13.63 2.86 -183.95 -0.53 -14.16 16 3 C 0.24 6.68 5.15 -5.19 -0.03 6.66 16 4 C -0.52 -15.50 9.39 -34.44 -0.32 -15.82 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 8 Si 0.90 22.40 29.54 -169.99 -5.02 17.37 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.55 12.84 7.66 -12.17 -0.09 12.75 16 13 O -0.54 -14.36 15.91 5.36 0.09 -14.28 16 14 C 0.13 2.50 6.62 -83.05 -0.55 1.95 16 15 C -0.19 -3.03 9.52 -38.83 -0.37 -3.40 16 16 C 0.24 2.89 6.81 -83.63 -0.57 2.32 16 17 N -0.87 -6.91 9.08 32.52 0.30 -6.61 16 18 C -0.24 -2.60 10.00 -39.15 -0.39 -2.99 16 19 C 0.13 1.54 11.17 -17.64 -0.20 1.35 16 20 N -0.49 -7.84 6.03 -9.89 -0.06 -7.90 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 23 H 0.10 1.73 5.26 -52.13 -0.27 1.45 16 24 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 25 H 0.04 1.37 7.39 -51.92 -0.38 0.99 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.14 2.27 7.66 -52.49 -0.40 1.87 16 28 H 0.40 2.78 8.86 -40.82 -0.36 2.42 16 29 H 0.40 2.13 8.86 -40.82 -0.36 1.77 16 30 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 31 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 273.58 15.07 4.12 4.12 Total: -1.00 -34.89 273.58 -5.86 -40.75 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.43 Total: 0.59 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.06 Total: 6.60 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.45 Total: -55.17 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.09 Total: -14.28 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -34.89 -5.86 -40.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050696002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.444 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds