Wall clock time and date at job start Sun Mar 29 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 120.00001 * 2 1 4 4 C 1.50709 * 109.47260 * 269.99924 * 3 2 1 5 5 H 1.08001 * 119.99610 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00132 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00199 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99758 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47343 * 89.99694 * 8 6 4 10 10 H 1.48506 * 109.46910 * 209.99532 * 8 6 4 11 11 H 1.48497 * 109.47436 * 329.99197 * 8 6 4 12 12 C 1.34779 * 120.00065 * 179.97438 * 2 1 3 13 13 O 1.21508 * 119.99844 * 182.02892 * 12 2 1 14 14 C 1.48186 * 119.99727 * 2.03165 * 12 2 1 15 15 C 1.39037 * 119.68755 * 172.78310 * 14 12 2 16 16 C 1.39449 * 118.95451 * 179.70189 * 15 14 12 17 17 N 1.39199 * 120.82951 * 180.25333 * 16 15 14 18 18 C 1.39413 * 118.33637 * 0.27798 * 16 15 14 19 19 C 1.38225 * 119.26733 * 0.02562 * 18 16 15 20 20 N 1.31646 * 120.99377 * 359.97438 * 19 18 16 21 21 H 1.09005 * 109.47254 * 263.76867 * 1 2 3 22 22 H 1.09003 * 109.47216 * 23.76394 * 1 2 3 23 23 H 1.08998 * 109.47441 * 143.76564 * 1 2 3 24 24 H 1.08994 * 109.47491 * 29.99745 * 3 2 1 25 25 H 1.09008 * 109.47366 * 150.00192 * 3 2 1 26 26 H 0.97001 * 120.00097 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.51929 * 359.97438 * 15 14 12 28 28 H 0.96996 * 119.99907 * 0.02562 * 17 16 15 29 29 H 0.96992 * 119.99772 * 179.97438 * 17 16 15 30 30 H 1.08003 * 120.36692 * 179.97438 * 18 16 15 31 31 H 1.07997 * 119.50613 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6176 -0.6732 8 14 3.4376 3.4169 -3.4340 9 1 2.3078 4.2605 -3.9000 10 1 4.6983 4.1993 -3.4969 11 1 3.5539 2.2201 -4.3052 12 6 2.1389 -1.1672 0.0005 13 8 3.3534 -1.1675 0.0378 14 6 1.3986 -2.4501 -0.0444 15 6 2.0967 -3.6430 -0.1954 16 6 1.3852 -4.8419 -0.2295 17 7 2.0449 -6.0591 -0.3738 18 6 -0.0034 -4.7908 -0.1158 19 6 -0.6252 -3.5644 0.0252 20 7 0.0739 -2.4492 0.0540 21 1 -0.3634 -0.1115 1.0216 22 1 -0.3634 0.9406 -0.4141 23 1 -0.3634 -0.8289 -0.6074 24 1 1.6084 2.0284 0.5137 25 1 3.1499 1.1384 0.5138 26 1 4.0310 4.4435 -0.8505 27 1 3.1733 -3.6415 -0.2805 28 1 3.0115 -6.0805 -0.4519 29 1 1.5381 -6.8858 -0.3957 30 1 -0.5868 -5.6994 -0.1385 31 1 -1.7006 -3.5203 0.1132 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050696002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:26 Heat of formation + Delta-G solvation = -8.695800 kcal Electronic energy + Delta-G solvation = -16099.412338 eV Core-core repulsion = 13380.322526 eV Total energy + Delta-G solvation = -2719.089812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.58180 -39.86893 -36.80520 -36.24603 -34.68035 -32.32762 -30.82643 -29.66474 -27.42273 -26.00268 -24.06082 -23.85927 -20.81424 -18.72763 -18.54822 -18.33024 -17.25358 -16.94395 -16.52725 -16.36576 -16.10313 -15.45568 -14.85499 -14.81097 -14.47374 -14.15880 -13.67273 -13.47258 -13.08109 -12.94725 -12.68267 -12.57646 -12.38229 -12.22142 -11.72265 -11.10662 -10.65004 -10.17071 -9.99610 -9.39364 -8.95824 -8.23087 -6.38979 -0.19239 0.54360 1.36374 1.39851 1.50552 1.91732 2.23852 2.40964 2.86085 3.01925 3.05625 3.29961 3.82515 4.04107 4.23121 4.46466 4.65506 4.77043 4.85275 4.91756 5.03086 5.03687 5.17768 5.27792 5.55706 5.71135 5.87372 6.03466 6.35494 6.63800 6.71336 6.88500 7.00235 7.24463 7.39691 8.84369 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038494 B = 0.005999 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.220184 B = 4666.679258 C = 4878.279008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.587 5.587 3 C 0.255 3.745 4 C -0.546 4.546 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.973 3.027 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.274 1.274 12 C 0.540 3.460 13 O -0.592 6.592 14 C 0.106 3.894 15 C -0.206 4.206 16 C 0.249 3.751 17 N -0.847 5.847 18 C -0.223 4.223 19 C 0.128 3.872 20 N -0.510 5.510 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.116 0.884 24 H 0.027 0.973 25 H 0.002 0.998 26 H 0.269 0.731 27 H 0.127 0.873 28 H 0.409 0.591 29 H 0.418 0.582 30 H 0.176 0.824 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 -20.033 0.117 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.315 5.315 3 C 0.134 3.866 4 C -0.585 4.585 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.199 1.199 12 C 0.328 3.672 13 O -0.473 6.473 14 C -0.029 4.029 15 C -0.233 4.233 16 C 0.133 3.867 17 N -0.387 5.387 18 C -0.249 4.249 19 C -0.030 4.030 20 N -0.226 5.226 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.134 0.866 24 H 0.045 0.955 25 H 0.020 0.980 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.238 0.762 29 H 0.250 0.750 30 H 0.193 0.807 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.144 -19.002 0.287 21.542 hybrid contribution 1.315 -0.262 -0.679 1.503 sum -8.830 -19.264 -0.393 21.195 Atomic orbital electron populations 1.22375 0.77070 1.03308 1.02800 1.48102 1.09094 1.05947 1.68401 1.18904 0.91187 0.79986 0.96516 1.21650 1.37271 1.06901 0.92630 0.93118 1.25896 0.94616 0.96153 1.02395 1.70058 1.38731 1.14754 1.33156 0.85341 0.78252 0.78177 0.78572 1.18605 1.20203 1.19887 1.18680 0.86535 0.84503 0.77473 1.90671 1.15301 1.87746 1.53630 1.20578 0.90949 0.92040 0.99370 1.21462 1.01308 0.91519 1.09040 1.17939 0.92454 0.86341 0.89985 1.42331 1.10636 1.04483 1.81266 1.22114 0.92177 1.01527 1.09042 1.23348 1.01801 0.86478 0.91349 1.68057 1.05459 1.31743 1.17349 0.92181 0.92893 0.86607 0.95544 0.98030 0.92223 0.85516 0.76159 0.75018 0.80655 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.33 9.30 127.77 1.19 4.52 16 2 N -0.59 -29.18 2.86 -854.18 -2.44 -31.62 16 3 C 0.26 15.03 5.15 85.64 0.44 15.47 16 4 C -0.55 -33.56 9.39 25.60 0.24 -33.32 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.51 5.46 84.65 0.46 0.97 16 7 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 8 Si 0.97 46.48 29.54 68.60 2.03 48.50 16 9 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.54 26.65 7.66 86.89 0.67 27.31 16 13 O -0.59 -33.90 15.91 -3.74 -0.06 -33.95 16 14 C 0.11 3.99 6.62 41.83 0.28 4.27 16 15 C -0.21 -6.46 9.52 22.75 0.22 -6.25 16 16 C 0.25 5.18 6.81 38.55 0.26 5.44 16 17 N -0.85 -10.51 9.08 -51.02 -0.46 -10.97 16 18 C -0.22 -3.64 10.00 22.55 0.23 -3.42 16 19 C 0.13 2.55 11.17 84.72 0.95 3.49 16 20 N -0.51 -15.51 6.03 -185.21 -1.12 -16.63 16 21 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 22 H 0.05 2.04 8.03 -2.39 -0.02 2.02 16 23 H 0.12 4.06 5.26 -2.79 -0.01 4.04 16 24 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 25 H 0.00 0.11 7.39 -2.38 -0.02 0.09 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.13 4.25 7.66 -2.91 -0.02 4.23 16 28 H 0.41 4.61 8.86 -92.71 -0.82 3.79 16 29 H 0.42 2.47 8.86 -92.71 -0.82 1.65 16 30 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -81.00 273.58 2.68 -78.32 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -0.47 Total: 5.56 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 4.92 Total: 18.49 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -3.74 Total: -116.92 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.06 Total: -33.95 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -81.00 2.68 -78.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050696002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.620 kcal (2) G-P(sol) polarization free energy of solvation -80.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds