Wall clock time and date at job start Sun Mar 29 2020 21:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46911 * 2 1 4 4 N 1.46498 * 109.47016 * 180.02562 * 3 2 1 5 5 C 1.36774 * 119.99954 * 264.68190 * 4 3 2 6 6 H 1.08003 * 120.00033 * 134.71522 * 5 4 3 7 7 C 1.39107 * 119.99956 * 314.71026 * 5 4 3 8 8 N 1.31320 * 120.00306 * 165.46427 * 7 5 4 9 9 Si 1.86802 * 119.99916 * 345.46715 * 7 5 4 10 10 H 1.48503 * 109.47353 * 94.28699 * 9 7 5 11 11 H 1.48508 * 109.46910 * 214.28379 * 9 7 5 12 12 H 1.48490 * 109.47131 * 334.27918 * 9 7 5 13 13 C 1.34780 * 120.00172 * 84.67865 * 4 3 2 14 14 O 1.21569 * 120.00002 * 4.06590 * 13 4 3 15 15 C 1.47983 * 120.00022 * 184.05782 * 13 4 3 16 16 C 1.39545 * 120.10775 * 174.66123 * 15 13 4 17 17 N 1.32045 * 119.86631 * 180.02562 * 16 15 13 18 18 C 1.32172 * 120.08026 * 359.97438 * 17 16 15 19 19 C 1.38710 * 120.21237 * 0.25340 * 18 17 16 20 20 N 1.31806 * 120.14315 * 359.47836 * 19 18 17 21 21 H 1.09000 * 109.47359 * 299.99945 * 1 2 3 22 22 H 1.09006 * 109.47178 * 59.99998 * 1 2 3 23 23 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47359 * 240.00055 * 2 1 3 25 25 H 1.08996 * 109.47535 * 119.99577 * 2 1 3 26 26 H 1.08992 * 109.47555 * 60.00264 * 3 2 1 27 27 H 1.08998 * 109.46993 * 299.99395 * 3 2 1 28 28 H 0.97002 * 120.00630 * 180.02562 * 8 7 5 29 29 H 1.08004 * 120.06846 * 359.97438 * 16 15 13 30 30 H 1.08001 * 119.88863 * 179.97438 * 18 17 16 31 31 H 1.08008 * 119.92831 * 179.72052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1893 1.5522 1.1785 6 1 5.0293 0.9033 1.3777 7 6 3.8034 2.4997 2.1212 8 7 4.2580 2.4254 3.3509 9 14 2.6386 3.8777 1.6377 10 1 1.2440 3.4836 1.9619 11 1 2.9916 5.1101 2.3872 12 1 2.7542 4.1348 0.1798 13 6 4.1784 1.3346 -1.1631 14 8 3.5724 1.3115 -2.2168 15 6 5.6554 1.2441 -1.1569 16 6 6.3481 1.0206 -2.3475 17 7 7.6660 0.9402 -2.3364 18 6 8.3282 1.0717 -1.2001 19 6 7.6427 1.2894 -0.0139 20 7 6.3275 1.3763 -0.0159 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 3.9886 3.0858 4.0084 29 1 5.8072 0.9126 -3.2761 30 1 9.4061 1.0051 -1.1945 31 1 8.1882 1.3917 0.9127 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542136.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:20 Heat of formation + Delta-G solvation = 12.039072 kcal Electronic energy + Delta-G solvation = -16696.988378 eV Core-core repulsion = 13978.797697 eV Total energy + Delta-G solvation = -2718.190680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.07933 -40.35846 -37.24546 -35.36239 -34.58608 -33.45263 -32.39564 -27.93043 -27.11034 -25.65193 -25.03844 -22.82949 -21.35689 -19.70622 -18.66566 -17.78570 -17.63720 -16.83150 -16.48337 -16.27586 -15.78581 -15.35865 -15.19799 -14.74587 -14.27321 -14.14191 -13.64180 -13.31845 -13.28374 -12.71071 -12.63513 -12.47501 -12.17715 -11.98574 -11.73935 -11.50647 -11.22191 -10.86341 -10.34167 -9.95095 -9.45192 -8.38651 -6.04274 -0.46105 0.21680 1.16918 1.28893 1.38209 1.85843 2.19090 2.40291 2.88978 3.00210 3.31033 3.43501 3.61344 3.90746 4.05895 4.12865 4.32022 4.38668 4.44784 4.55898 4.63797 4.65684 4.92592 5.10373 5.22003 5.31739 5.43164 5.53970 6.12743 6.32925 6.45827 6.80870 7.03467 7.34279 7.66196 8.70971 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.010926 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.898574 B = 2562.010395 C = 3332.750547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.092 3.908 4 N -0.449 5.449 5 C -0.306 4.306 6 H 0.115 0.885 7 C 0.033 3.967 8 N -0.894 5.894 9 Si 0.911 3.089 10 H -0.253 1.253 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.512 3.488 14 O -0.608 6.608 15 C 0.025 3.975 16 C 0.089 3.911 17 N -0.457 5.457 18 C 0.071 3.929 19 C 0.034 3.966 20 N -0.396 5.396 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.277 0.723 29 H 0.178 0.822 30 H 0.218 0.782 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -2.282 -4.379 5.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.030 4.030 4 N -0.166 5.166 5 C -0.435 4.435 6 H 0.133 0.867 7 C -0.170 4.170 8 N -0.532 5.532 9 Si 0.737 3.263 10 H -0.178 1.178 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.301 3.699 14 O -0.495 6.495 15 C -0.115 4.115 16 C -0.070 4.070 17 N -0.172 5.172 18 C -0.090 4.090 19 C -0.129 4.129 20 N -0.113 5.113 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.195 0.805 30 H 0.234 0.766 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.877 -2.208 -4.692 5.515 hybrid contribution -0.431 0.887 0.252 1.018 sum 1.445 -1.321 -4.440 4.852 Atomic orbital electron populations 1.21677 0.92969 1.03008 1.02200 1.21695 0.97734 0.95227 1.01581 1.21924 0.81078 0.98932 1.01063 1.43888 1.05203 1.61550 1.06000 1.19544 1.14330 1.18552 0.91059 0.86746 1.25810 0.98092 0.98300 0.94835 1.69682 1.45068 1.35874 1.02555 0.86365 0.80759 0.80614 0.78520 1.17816 1.21209 1.20318 1.18290 0.86302 0.81614 0.83670 1.90607 1.69389 1.58047 1.31408 1.22060 0.95576 1.02134 0.91682 1.23701 0.90959 0.93853 0.98525 1.68621 1.07412 1.11191 1.29949 1.24696 1.03648 0.92660 0.88008 1.24731 0.90707 0.95899 1.01559 1.69535 1.09197 1.05654 1.26886 0.92367 0.92055 0.90576 0.92762 0.92288 0.91494 0.91520 0.91299 0.80473 0.76567 0.78653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.30 16 2 C -0.12 -4.63 6.22 30.60 0.19 -4.44 16 3 C 0.09 4.03 3.92 86.38 0.34 4.37 16 4 N -0.45 -22.14 2.07 -638.69 -1.32 -23.45 16 5 C -0.31 -16.12 8.05 84.13 0.68 -15.44 16 6 H 0.12 6.43 6.05 -2.91 -0.02 6.41 16 7 C 0.03 1.76 5.35 84.98 0.45 2.22 16 8 N -0.89 -49.15 13.95 21.69 0.30 -48.85 16 9 Si 0.91 42.27 24.93 68.60 1.71 43.98 16 10 H -0.25 -10.79 6.78 99.48 0.67 -10.12 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 13 C 0.51 24.90 7.58 86.83 0.66 25.56 16 14 O -0.61 -30.37 16.00 -3.93 -0.06 -30.43 16 15 C 0.02 1.07 6.65 41.86 0.28 1.34 16 16 C 0.09 3.28 10.77 84.98 0.92 4.19 16 17 N -0.46 -14.51 10.49 -194.05 -2.04 -16.55 16 18 C 0.07 1.84 11.23 84.75 0.95 2.79 16 19 C 0.03 1.05 11.22 84.81 0.95 2.00 16 20 N -0.40 -16.76 6.50 -184.36 -1.20 -17.96 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.07 2.95 4.02 -2.39 -0.01 2.94 16 27 H 0.07 2.90 7.53 -2.39 -0.02 2.89 16 28 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.18 6.17 7.66 -2.91 -0.02 6.15 16 30 H 0.22 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.20 4.73 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -64.75 266.23 4.63 -60.11 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.11 Total: 13.86 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.13 Total: 19.29 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -4.25 Total: -106.81 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.06 Total: -30.43 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.71 Total: 43.98 kcal Total: -64.75 4.63 -60.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542136.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.154 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds