Wall clock time and date at job start Sun Mar 29 2020 22:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47080 * 2 1 4 4 C 1.36692 * 119.99817 * 98.57528 * 3 2 1 5 5 H 1.07997 * 120.00159 * 158.89506 * 4 3 2 6 6 C 1.39183 * 119.99911 * 339.16288 * 4 3 2 7 7 N 1.31277 * 120.00010 * 358.07893 * 6 4 3 8 8 Si 1.86796 * 119.99875 * 178.07600 * 6 4 3 9 9 H 1.48495 * 109.47323 * 90.00398 * 8 6 4 10 10 H 1.48507 * 109.47010 * 210.00530 * 8 6 4 11 11 H 1.48501 * 109.47087 * 329.99904 * 8 6 4 12 12 C 1.34778 * 120.00515 * 278.57509 * 3 2 1 13 13 O 1.21540 * 120.00384 * 176.60047 * 12 3 2 14 14 C 1.48231 * 119.99655 * 356.60299 * 12 3 2 15 15 C 1.39673 * 120.56181 * 187.61737 * 14 12 3 16 16 C 1.38674 * 118.26262 * 179.97438 * 15 14 12 17 17 N 1.32257 * 119.15899 * 359.97438 * 16 15 14 18 18 C 1.31889 * 121.06050 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.03800 * 179.97438 * 18 17 16 20 20 N 1.31574 * 121.92478 * 359.73414 * 18 17 16 21 21 H 1.09007 * 109.47343 * 299.99526 * 1 2 3 22 22 H 1.09002 * 109.47606 * 59.99506 * 1 2 3 23 23 H 1.09006 * 109.47291 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46980 * 240.00656 * 2 1 3 25 25 H 1.09002 * 109.47606 * 120.00494 * 2 1 3 26 26 H 0.96994 * 120.00341 * 179.97438 * 7 6 4 27 27 H 1.08004 * 120.86924 * 359.97438 * 15 14 12 28 28 H 1.07994 * 120.42272 * 179.97438 * 16 15 14 29 29 H 1.08999 * 109.47629 * 89.99783 * 19 18 17 30 30 H 1.09004 * 109.46937 * 209.99810 * 19 18 17 31 31 H 1.08999 * 109.47129 * 329.99720 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4125 1.9667 1.1706 5 1 3.0727 2.8211 1.1514 6 6 1.9674 1.4583 2.3874 7 7 1.1391 0.4401 2.4098 8 14 2.5488 2.2248 3.9886 9 1 1.6167 3.3108 4.3846 10 1 2.5805 1.1876 5.0510 11 1 3.9115 2.7851 3.8030 12 6 2.0788 2.0747 -1.1541 13 8 2.4251 3.2397 -1.1457 14 6 1.7231 1.4165 -2.4337 15 6 1.9314 2.0699 -3.6505 16 6 1.5818 1.4096 -4.8187 17 7 1.0677 0.1934 -4.7424 18 6 0.8839 -0.3957 -3.5768 19 6 0.2941 -1.7821 -3.5429 20 7 1.2046 0.1897 -2.4430 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8932 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.8293 0.0855 3.2577 27 1 2.3537 3.0635 -3.6807 28 1 1.7275 1.8824 -5.7787 29 1 1.0957 -2.5192 -3.5895 30 1 -0.2685 -1.9150 -2.6188 31 1 -0.3715 -1.9147 -4.3958 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:47 Heat of formation + Delta-G solvation = 43.907707 kcal Electronic energy + Delta-G solvation = -16844.118522 eV Core-core repulsion = 14127.309770 eV Total energy + Delta-G solvation = -2716.808752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67785 -38.25219 -35.22762 -33.42502 -32.67839 -31.65154 -29.33648 -28.08866 -25.94421 -24.06995 -22.55822 -21.96481 -19.62312 -17.55473 -16.82993 -16.33622 -15.31884 -14.91345 -14.78695 -14.11141 -14.02292 -13.64363 -13.24415 -12.71846 -12.45002 -12.27552 -12.13384 -11.70746 -11.35848 -11.14092 -10.80990 -10.55442 -10.41094 -10.31155 -10.18477 -9.61550 -9.04845 -8.99128 -8.86170 -8.31479 -7.70423 -6.40542 -3.98407 1.13151 1.39639 3.08815 3.16383 3.21093 3.69523 3.95377 4.29542 4.42547 4.45845 4.68532 5.07820 5.32471 5.44276 5.56226 5.73034 5.75688 5.82250 6.15435 6.25321 6.61063 6.79938 6.84105 6.92320 7.16925 7.28117 7.37625 7.54279 7.80122 7.99056 8.37651 8.52305 9.01644 9.26109 9.87586 10.46418 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038811 B = 0.008262 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.263133 B = 3388.160465 C = 4009.639503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.112 3.888 3 N -0.392 5.392 4 C -0.292 4.292 5 H 0.105 0.895 6 C 0.030 3.970 7 N -0.851 5.851 8 Si 0.936 3.064 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.457 3.543 13 O -0.594 6.594 14 C 0.164 3.836 15 C -0.198 4.198 16 C 0.138 3.862 17 N -0.533 5.533 18 C 0.298 3.702 19 C -0.081 4.081 20 N -0.483 5.483 21 H 0.072 0.928 22 H 0.024 0.976 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.271 0.729 27 H 0.150 0.850 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -4.378 -7.014 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.011 4.011 3 N -0.106 5.106 4 C -0.421 4.421 5 H 0.123 0.877 6 C -0.176 4.176 7 N -0.489 5.489 8 Si 0.762 3.238 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.192 1.192 12 C 0.245 3.755 13 O -0.481 6.481 14 C 0.017 3.983 15 C -0.222 4.222 16 C -0.027 4.027 17 N -0.250 5.250 18 C 0.030 3.970 19 C -0.139 4.139 20 N -0.201 5.201 21 H 0.090 0.910 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.168 0.832 28 H 0.181 0.819 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.473 -4.869 -6.772 8.470 hybrid contribution 0.480 1.143 0.661 1.405 sum -0.993 -3.726 -6.112 7.226 Atomic orbital electron populations 1.21807 0.96570 0.99236 1.00320 1.22005 0.94951 0.82253 1.01862 1.43866 1.49431 1.11794 1.05513 1.19940 1.26054 1.13916 0.82240 0.87738 1.25551 0.95534 0.96345 1.00133 1.70055 1.29352 1.22425 1.27045 0.85760 0.79465 0.78667 0.79886 1.20015 1.20583 1.19170 1.17431 0.88943 0.86306 0.82773 1.90603 1.55956 1.15902 1.85675 1.22227 0.91114 0.89269 0.95716 1.22798 1.02870 1.03290 0.93212 1.23056 0.91316 0.89966 0.98366 1.68093 1.15961 1.11122 1.29797 1.23350 0.92402 0.97252 0.83957 1.20504 1.00854 0.88742 1.03835 1.69162 1.12281 1.09646 1.29048 0.90962 0.95727 0.94740 0.91281 0.88260 0.91785 0.83189 0.81862 0.90102 0.89582 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.99 37.15 0.33 -2.36 16 2 C 0.11 2.63 4.86 -4.05 -0.02 2.61 16 3 N -0.39 -10.31 2.64 -115.76 -0.31 -10.61 16 4 C -0.29 -7.96 9.33 -15.03 -0.14 -8.10 16 5 H 0.10 2.95 7.38 -52.49 -0.39 2.56 16 6 C 0.03 0.75 5.29 -17.44 -0.09 0.66 16 7 N -0.85 -21.14 7.99 55.51 0.44 -20.70 16 8 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 9 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 12 C 0.46 11.85 7.54 -12.15 -0.09 11.76 16 13 O -0.59 -16.87 16.15 5.33 0.09 -16.79 16 14 C 0.16 3.57 6.48 -82.64 -0.54 3.03 16 15 C -0.20 -3.63 9.72 -38.88 -0.38 -4.01 16 16 C 0.14 2.14 11.31 -17.21 -0.19 1.94 16 17 N -0.53 -8.90 10.32 -10.75 -0.11 -9.01 16 18 C 0.30 5.14 7.64 -157.30 -1.20 3.94 16 19 C -0.08 -1.05 10.31 36.00 0.37 -0.68 16 20 N -0.48 -9.67 4.36 -7.33 -0.03 -9.70 16 21 H 0.07 1.78 6.34 -51.93 -0.33 1.45 16 22 H 0.02 0.54 6.58 -51.93 -0.34 0.20 16 23 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.54 5.38 -51.93 -0.28 1.26 16 25 H 0.10 2.47 5.82 -51.93 -0.30 2.17 16 26 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 27 H 0.15 2.62 7.76 -52.48 -0.41 2.21 16 28 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 262.00 15.07 3.95 3.95 Total: -1.00 -29.95 262.00 -6.24 -36.19 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -3.30 Total: 3.10 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -1.95 Total: 8.79 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.00 Total: -50.02 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.09 Total: -16.79 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.95 -6.24 -36.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.101 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds