Wall clock time and date at job start Sun Mar 29 2020 22:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47080 * 2 1 4 4 C 1.36692 * 119.99817 * 98.57528 * 3 2 1 5 5 H 1.07997 * 120.00159 * 158.89506 * 4 3 2 6 6 C 1.39183 * 119.99911 * 339.16288 * 4 3 2 7 7 N 1.31277 * 120.00010 * 358.07893 * 6 4 3 8 8 Si 1.86796 * 119.99875 * 178.07600 * 6 4 3 9 9 H 1.48495 * 109.47323 * 90.00398 * 8 6 4 10 10 H 1.48507 * 109.47010 * 210.00530 * 8 6 4 11 11 H 1.48501 * 109.47087 * 329.99904 * 8 6 4 12 12 C 1.34778 * 120.00515 * 278.57509 * 3 2 1 13 13 O 1.21540 * 120.00384 * 176.60047 * 12 3 2 14 14 C 1.48231 * 119.99655 * 356.60299 * 12 3 2 15 15 C 1.39673 * 120.56181 * 187.61737 * 14 12 3 16 16 C 1.38674 * 118.26262 * 179.97438 * 15 14 12 17 17 N 1.32257 * 119.15899 * 359.97438 * 16 15 14 18 18 C 1.31889 * 121.06050 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.03800 * 179.97438 * 18 17 16 20 20 N 1.31574 * 121.92478 * 359.73414 * 18 17 16 21 21 H 1.09007 * 109.47343 * 299.99526 * 1 2 3 22 22 H 1.09002 * 109.47606 * 59.99506 * 1 2 3 23 23 H 1.09006 * 109.47291 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46980 * 240.00656 * 2 1 3 25 25 H 1.09002 * 109.47606 * 120.00494 * 2 1 3 26 26 H 0.96994 * 120.00341 * 179.97438 * 7 6 4 27 27 H 1.08004 * 120.86924 * 359.97438 * 15 14 12 28 28 H 1.07994 * 120.42272 * 179.97438 * 16 15 14 29 29 H 1.08999 * 109.47629 * 89.99783 * 19 18 17 30 30 H 1.09004 * 109.46937 * 209.99810 * 19 18 17 31 31 H 1.08999 * 109.47129 * 329.99720 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.4125 1.9667 1.1706 5 1 3.0727 2.8211 1.1514 6 6 1.9674 1.4583 2.3874 7 7 1.1391 0.4401 2.4098 8 14 2.5488 2.2248 3.9886 9 1 1.6167 3.3108 4.3846 10 1 2.5805 1.1876 5.0510 11 1 3.9115 2.7851 3.8030 12 6 2.0788 2.0747 -1.1541 13 8 2.4251 3.2397 -1.1457 14 6 1.7231 1.4165 -2.4337 15 6 1.9314 2.0699 -3.6505 16 6 1.5818 1.4096 -4.8187 17 7 1.0677 0.1934 -4.7424 18 6 0.8839 -0.3957 -3.5768 19 6 0.2941 -1.7821 -3.5429 20 7 1.2046 0.1897 -2.4430 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8932 -0.5137 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.8293 0.0855 3.2577 27 1 2.3537 3.0635 -3.6807 28 1 1.7275 1.8824 -5.7787 29 1 1.0957 -2.5192 -3.5895 30 1 -0.2685 -1.9150 -2.6188 31 1 -0.3715 -1.9147 -4.3958 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068232236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:47 Heat of formation + Delta-G solvation = 25.582450 kcal Electronic energy + Delta-G solvation = -16844.913165 eV Core-core repulsion = 14127.309770 eV Total energy + Delta-G solvation = -2717.603395 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16974 -40.11597 -37.19886 -34.96750 -34.04494 -33.52341 -31.21463 -29.30675 -27.77283 -25.73559 -24.06196 -23.72720 -21.34890 -19.28543 -18.63637 -17.90282 -17.09440 -16.45665 -16.33535 -15.86570 -15.60696 -15.39222 -14.80788 -14.54634 -13.99738 -13.54523 -13.42707 -13.17715 -13.12879 -12.89209 -12.69642 -12.20055 -12.11207 -12.03744 -11.75102 -11.34026 -10.85004 -10.84019 -10.42132 -10.02429 -9.60181 -8.30288 -6.02872 -0.40292 0.04674 1.38796 1.41363 1.53658 1.98446 2.20258 2.72678 2.82454 3.08387 3.13821 3.22491 3.76752 3.97168 4.14229 4.49635 4.62322 4.76848 4.79641 4.95768 5.02107 5.07725 5.12614 5.27416 5.33893 5.48573 5.61675 5.91025 5.94767 6.04298 6.45969 7.00887 7.10967 7.32667 7.90815 8.55080 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038811 B = 0.008262 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.263133 B = 3388.160465 C = 4009.639503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.120 3.880 3 N -0.407 5.407 4 C -0.344 4.344 5 H 0.079 0.921 6 C 0.003 3.997 7 N -0.859 5.859 8 Si 1.000 3.000 9 H -0.275 1.275 10 H -0.262 1.262 11 H -0.271 1.271 12 C 0.443 3.557 13 O -0.634 6.634 14 C 0.137 3.863 15 C -0.201 4.201 16 C 0.162 3.838 17 N -0.527 5.527 18 C 0.292 3.708 19 C -0.079 4.079 20 N -0.499 5.499 21 H 0.044 0.956 22 H 0.019 0.981 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.278 0.722 27 H 0.154 0.846 28 H 0.216 0.784 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -5.731 -8.499 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.002 4.002 3 N -0.121 5.121 4 C -0.473 4.473 5 H 0.097 0.903 6 C -0.202 4.202 7 N -0.496 5.496 8 Si 0.822 3.178 9 H -0.200 1.200 10 H -0.186 1.186 11 H -0.196 1.196 12 C 0.233 3.767 13 O -0.523 6.523 14 C -0.009 4.009 15 C -0.225 4.225 16 C -0.005 4.005 17 N -0.242 5.242 18 C 0.025 3.975 19 C -0.137 4.137 20 N -0.218 5.218 21 H 0.063 0.937 22 H 0.038 0.962 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.171 0.829 28 H 0.233 0.767 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.142 -6.276 -8.245 10.581 hybrid contribution 0.637 1.518 0.901 1.877 sum -1.504 -4.758 -7.344 8.879 Atomic orbital electron populations 1.21615 0.95601 1.00365 0.98609 1.21991 0.95560 0.81068 1.01547 1.44064 1.49836 1.12671 1.05491 1.19875 1.28465 1.15053 0.83873 0.90338 1.26268 0.95152 0.96503 1.02287 1.70120 1.28942 1.22392 1.28132 0.84848 0.78578 0.78118 0.76242 1.20015 1.18634 1.19553 1.18129 0.88118 0.86211 0.84225 1.90537 1.57362 1.17666 1.86783 1.21777 0.93517 0.90787 0.94814 1.22969 1.02883 1.03577 0.93029 1.23838 0.88387 0.89049 0.99182 1.68280 1.15345 1.11392 1.29216 1.24166 0.91481 0.98542 0.83274 1.20674 1.01652 0.86453 1.04933 1.68999 1.12830 1.09085 1.30837 0.93661 0.96220 0.92052 0.90000 0.89917 0.91085 0.82868 0.76704 0.88237 0.89425 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.62 8.99 71.98 0.65 -3.97 16 2 C 0.12 5.75 4.86 86.38 0.42 6.17 16 3 N -0.41 -22.28 2.64 -638.45 -1.68 -23.96 16 4 C -0.34 -19.71 9.33 84.16 0.79 -18.92 16 5 H 0.08 4.76 7.38 -2.91 -0.02 4.73 16 6 C 0.00 0.13 5.29 85.00 0.45 0.58 16 7 N -0.86 -43.18 7.99 21.70 0.17 -43.01 16 8 Si 1.00 41.24 29.55 68.60 2.03 43.27 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 12 C 0.44 23.94 7.54 86.90 0.65 24.60 16 13 O -0.63 -37.82 16.15 -3.84 -0.06 -37.88 16 14 C 0.14 5.97 6.48 41.95 0.27 6.24 16 15 C -0.20 -7.10 9.72 22.72 0.22 -6.88 16 16 C 0.16 4.40 11.31 84.73 0.96 5.36 16 17 N -0.53 -15.57 10.32 -187.93 -1.94 -17.51 16 18 C 0.29 9.28 7.64 138.79 1.06 10.34 16 19 C -0.08 -1.77 10.31 71.23 0.73 -1.03 16 20 N -0.50 -19.42 4.36 -177.12 -0.77 -20.20 16 21 H 0.04 2.25 6.34 -2.38 -0.02 2.23 16 22 H 0.02 0.86 6.58 -2.39 -0.02 0.84 16 23 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 24 H 0.08 3.67 5.38 -2.39 -0.01 3.66 16 25 H 0.08 4.20 5.82 -2.39 -0.01 4.18 16 26 H 0.28 12.92 8.31 -92.71 -0.77 12.15 16 27 H 0.15 5.26 7.76 -2.91 -0.02 5.23 16 28 H 0.22 3.57 8.06 -2.91 -0.02 3.55 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -67.74 262.00 5.09 -62.65 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.15 Total: 14.17 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.20 Total: 22.48 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.22 Total: -104.68 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.06 Total: -37.88 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -67.74 5.09 -62.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.231 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds