Wall clock time and date at job start Sun Mar 29 2020 22:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47341 * 2 1 4 4 C 1.36770 * 120.00104 * 267.10910 * 3 2 1 5 5 H 1.08003 * 119.99831 * 139.44146 * 4 3 2 6 6 C 1.39115 * 120.00075 * 319.43227 * 4 3 2 7 7 N 1.31316 * 119.99798 * 165.14961 * 6 4 3 8 8 Si 1.86798 * 120.00055 * 345.15019 * 6 4 3 9 9 H 1.48503 * 109.46975 * 90.87093 * 8 6 4 10 10 H 1.48493 * 109.47208 * 210.87358 * 8 6 4 11 11 H 1.48496 * 109.47186 * 330.87578 * 8 6 4 12 12 C 1.34785 * 119.99717 * 87.10880 * 3 2 1 13 13 O 1.21569 * 119.99664 * 174.47539 * 12 3 2 14 14 C 1.47979 * 119.99937 * 354.74749 * 12 3 2 15 15 C 1.39540 * 120.10516 * 174.64878 * 14 12 3 16 16 N 1.32063 * 119.86234 * 179.68517 * 15 14 12 17 17 C 1.32165 * 120.07759 * 0.59497 * 16 15 14 18 18 C 1.50695 * 119.89030 * 179.72434 * 17 16 15 19 19 C 1.38714 * 120.21808 * 359.70552 * 17 16 15 20 20 N 1.31811 * 120.13466 * 359.97438 * 19 17 16 21 21 H 1.08999 * 109.46746 * 299.99875 * 1 2 3 22 22 H 1.08995 * 109.46863 * 59.99258 * 1 2 3 23 23 H 1.08994 * 109.47402 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46746 * 240.00125 * 2 1 3 25 25 H 1.09000 * 109.47348 * 120.00231 * 2 1 3 26 26 H 0.96998 * 120.00104 * 180.02562 * 7 6 4 27 27 H 1.07997 * 120.07551 * 0.02562 * 15 14 12 28 28 H 1.08999 * 109.47601 * 269.98498 * 18 17 16 29 29 H 1.09011 * 109.47131 * 29.97959 * 18 17 16 30 30 H 1.09002 * 109.47303 * 149.97634 * 18 17 16 31 31 H 1.07994 * 119.93132 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3027 2.0060 -1.1829 5 1 2.0305 3.0414 -1.3258 6 6 2.9426 1.3080 -2.2021 7 7 2.9578 1.7943 -3.4218 8 14 3.7801 -0.3210 -1.8355 9 1 2.8160 -1.4311 -2.0435 10 1 4.9408 -0.4964 -2.7448 11 1 4.2492 -0.3303 -0.4266 12 6 2.1875 2.0361 1.1658 13 8 2.6867 3.1446 1.1734 14 6 1.7711 1.4034 2.4371 15 6 2.0459 2.0296 3.6534 16 7 1.6666 1.4637 4.7848 17 6 1.0384 0.3010 4.7658 18 6 0.6130 -0.3439 6.0596 19 6 0.7691 -0.3274 3.5589 20 7 1.1383 0.2329 2.4243 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.4036 1.3075 -4.1325 27 1 2.5628 2.9777 3.6695 28 1 1.4128 -0.9881 6.4248 29 1 0.4030 0.4290 6.7991 30 1 -0.2846 -0.9389 5.8911 31 1 0.2559 -1.2775 3.5488 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:56 Heat of formation + Delta-G solvation = 42.126423 kcal Electronic energy + Delta-G solvation = -16701.413681 eV Core-core repulsion = 13984.527686 eV Total energy + Delta-G solvation = -2716.885995 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00402 -38.51133 -35.40551 -34.30211 -32.59002 -32.27015 -29.67255 -28.40892 -25.33415 -24.26692 -23.09663 -22.67389 -19.87311 -17.68031 -16.89196 -16.51520 -15.87525 -15.55905 -15.12635 -14.69851 -14.01360 -13.67430 -13.42825 -12.89273 -12.73566 -12.61164 -12.42461 -12.28634 -11.91691 -11.53268 -11.29261 -10.97915 -10.90477 -10.60337 -10.04403 -9.69415 -9.28436 -9.06907 -8.92817 -8.44604 -7.80667 -6.51739 -4.08379 0.71714 1.28403 2.99339 3.15698 3.21801 3.42408 4.01168 4.06949 4.24353 4.27730 4.45799 4.66905 4.89278 5.02519 5.26737 5.41623 5.45747 5.61028 5.68208 5.80845 5.89092 6.12165 6.21568 6.40298 6.57414 6.67608 6.97366 7.39572 7.44215 7.91064 8.16730 8.40880 8.81264 9.15751 9.65546 10.58349 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037965 B = 0.008239 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.350983 B = 3397.686560 C = 3688.006273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 N -0.429 5.429 4 C -0.305 4.305 5 H 0.109 0.891 6 C 0.061 3.939 7 N -0.854 5.854 8 Si 0.891 3.109 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.496 3.504 13 O -0.562 6.562 14 C 0.049 3.951 15 C 0.098 3.902 16 N -0.445 5.445 17 C 0.067 3.933 18 C -0.097 4.097 19 C 0.041 3.959 20 N -0.408 5.408 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.278 0.722 27 H 0.179 0.821 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -8.623 12.833 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 N -0.147 5.147 4 C -0.433 4.433 5 H 0.127 0.873 6 C -0.147 4.147 7 N -0.489 5.489 8 Si 0.719 3.281 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.189 1.189 12 C 0.284 3.716 13 O -0.445 6.445 14 C -0.091 4.091 15 C -0.063 4.063 16 N -0.160 5.160 17 C -0.074 4.074 18 C -0.155 4.155 19 C -0.121 4.121 20 N -0.126 5.126 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.196 0.804 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.610 -8.053 12.560 15.616 hybrid contribution 0.397 -0.955 -0.059 1.036 sum -4.213 -9.008 12.501 15.974 Atomic orbital electron populations 1.21892 0.95871 1.00554 1.01636 1.22175 0.95408 0.84756 1.01460 1.43733 1.53817 1.12013 1.05160 1.19197 1.37134 0.99554 0.87433 0.87334 1.25479 0.95554 0.98814 0.94817 1.69638 1.39668 1.39520 1.00055 0.86760 0.79204 0.82837 0.79305 1.19709 1.21360 1.18881 1.17555 0.84598 0.87658 0.81822 1.90670 1.48030 1.20352 1.85447 1.22787 0.96773 0.92329 0.97214 1.23724 0.95438 1.00125 0.87001 1.68359 1.08737 1.09039 1.29879 1.22407 0.95573 0.92392 0.97030 1.20639 1.01551 1.00449 0.92837 1.23727 0.98884 1.00983 0.88520 1.69154 1.06914 1.08276 1.28238 0.92555 0.92726 0.93118 0.92217 0.89282 0.91155 0.80403 0.90273 0.90416 0.90430 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.57 37.16 0.36 -2.26 16 2 C 0.08 1.81 4.28 -4.04 -0.02 1.80 16 3 N -0.43 -10.79 2.16 -115.85 -0.25 -11.04 16 4 C -0.31 -8.66 9.33 -15.02 -0.14 -8.80 16 5 H 0.11 3.41 8.01 -52.48 -0.42 2.99 16 6 C 0.06 1.69 5.39 -17.45 -0.09 1.59 16 7 N -0.85 -24.32 13.95 55.50 0.77 -23.54 16 8 Si 0.89 20.94 24.83 -169.99 -4.22 16.71 16 9 H -0.27 -5.89 6.59 56.52 0.37 -5.52 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.26 -6.29 7.11 56.52 0.40 -5.88 16 12 C 0.50 12.19 7.59 -12.26 -0.09 12.09 16 13 O -0.56 -15.42 16.30 5.31 0.09 -15.33 16 14 C 0.05 0.98 6.54 -82.85 -0.54 0.44 16 15 C 0.10 1.76 10.78 -16.97 -0.18 1.57 16 16 N -0.44 -7.07 10.41 -8.93 -0.09 -7.16 16 17 C 0.07 0.88 6.79 -82.28 -0.56 0.32 16 18 C -0.10 -0.83 10.19 36.00 0.37 -0.46 16 19 C 0.04 0.55 10.88 -17.38 -0.19 0.36 16 20 N -0.41 -7.10 4.29 -9.63 -0.04 -7.14 16 21 H 0.06 1.03 6.48 -51.93 -0.34 0.69 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.33 3.13 -51.93 -0.16 1.17 16 25 H 0.09 1.79 5.51 -51.93 -0.29 1.50 16 26 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.18 3.08 7.66 -52.49 -0.40 2.67 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 261.90 15.07 3.95 3.95 Total: -1.00 -31.79 261.90 -4.20 -35.98 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.30 Total: 0.92 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.10 Total: 6.66 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.39 Total: -48.90 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.09 Total: -15.33 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.22 Total: 16.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.79 -4.20 -35.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.110 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds