Wall clock time and date at job start Sun Mar 29 2020 22:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47341 * 2 1 4 4 C 1.36770 * 120.00104 * 267.10910 * 3 2 1 5 5 H 1.08003 * 119.99831 * 139.44146 * 4 3 2 6 6 C 1.39115 * 120.00075 * 319.43227 * 4 3 2 7 7 N 1.31316 * 119.99798 * 165.14961 * 6 4 3 8 8 Si 1.86798 * 120.00055 * 345.15019 * 6 4 3 9 9 H 1.48503 * 109.46975 * 90.87093 * 8 6 4 10 10 H 1.48493 * 109.47208 * 210.87358 * 8 6 4 11 11 H 1.48496 * 109.47186 * 330.87578 * 8 6 4 12 12 C 1.34785 * 119.99717 * 87.10880 * 3 2 1 13 13 O 1.21569 * 119.99664 * 174.47539 * 12 3 2 14 14 C 1.47979 * 119.99937 * 354.74749 * 12 3 2 15 15 C 1.39540 * 120.10516 * 174.64878 * 14 12 3 16 16 N 1.32063 * 119.86234 * 179.68517 * 15 14 12 17 17 C 1.32165 * 120.07759 * 0.59497 * 16 15 14 18 18 C 1.50695 * 119.89030 * 179.72434 * 17 16 15 19 19 C 1.38714 * 120.21808 * 359.70552 * 17 16 15 20 20 N 1.31811 * 120.13466 * 359.97438 * 19 17 16 21 21 H 1.08999 * 109.46746 * 299.99875 * 1 2 3 22 22 H 1.08995 * 109.46863 * 59.99258 * 1 2 3 23 23 H 1.08994 * 109.47402 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46746 * 240.00125 * 2 1 3 25 25 H 1.09000 * 109.47348 * 120.00231 * 2 1 3 26 26 H 0.96998 * 120.00104 * 180.02562 * 7 6 4 27 27 H 1.07997 * 120.07551 * 0.02562 * 15 14 12 28 28 H 1.08999 * 109.47601 * 269.98498 * 18 17 16 29 29 H 1.09011 * 109.47131 * 29.97959 * 18 17 16 30 30 H 1.09002 * 109.47303 * 149.97634 * 18 17 16 31 31 H 1.07994 * 119.93132 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3027 2.0060 -1.1829 5 1 2.0305 3.0414 -1.3258 6 6 2.9426 1.3080 -2.2021 7 7 2.9578 1.7943 -3.4218 8 14 3.7801 -0.3210 -1.8355 9 1 2.8160 -1.4311 -2.0435 10 1 4.9408 -0.4964 -2.7448 11 1 4.2492 -0.3303 -0.4266 12 6 2.1875 2.0361 1.1658 13 8 2.6867 3.1446 1.1734 14 6 1.7711 1.4034 2.4371 15 6 2.0459 2.0296 3.6534 16 7 1.6666 1.4637 4.7848 17 6 1.0384 0.3010 4.7658 18 6 0.6130 -0.3439 6.0596 19 6 0.7691 -0.3274 3.5589 20 7 1.1383 0.2329 2.4243 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.4036 1.3075 -4.1325 27 1 2.5628 2.9777 3.6695 28 1 1.4128 -0.9881 6.4248 29 1 0.4030 0.4290 6.7991 30 1 -0.2846 -0.9389 5.8911 31 1 0.2559 -1.2775 3.5488 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241699.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:56 Heat of formation + Delta-G solvation = 18.932060 kcal Electronic energy + Delta-G solvation = -16702.419464 eV Core-core repulsion = 13984.527686 eV Total energy + Delta-G solvation = -2717.891778 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.35686 -40.29989 -37.29993 -35.66955 -34.26723 -33.73558 -31.37049 -29.63654 -27.12757 -25.52174 -24.64893 -24.11264 -21.58953 -19.24433 -18.71601 -18.16626 -17.51798 -17.01338 -16.54213 -16.16642 -15.60991 -15.28630 -15.05942 -14.55114 -14.25774 -13.94269 -13.65082 -13.50242 -13.18838 -13.10182 -12.75292 -12.63356 -12.46367 -12.15407 -11.91474 -11.37192 -11.19478 -10.83910 -10.21303 -9.93798 -9.76448 -8.59317 -6.26331 -0.59053 0.03987 1.14828 1.26291 1.38407 1.83055 2.10775 2.42243 2.67759 2.92769 3.08626 3.12600 3.43619 3.79930 4.03868 4.16108 4.18846 4.51983 4.54676 4.67709 4.83797 4.92095 4.96057 5.10031 5.14624 5.36532 5.48677 5.52179 5.93415 6.14207 6.42051 6.68740 6.79356 7.13458 7.69349 8.56389 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037965 B = 0.008239 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.350983 B = 3397.686560 C = 3688.006273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 N -0.446 5.446 4 C -0.332 4.332 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.901 5.901 8 Si 0.955 3.045 9 H -0.233 1.233 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.496 3.504 13 O -0.608 6.608 14 C 0.017 3.983 15 C 0.098 3.902 16 N -0.457 5.457 17 C 0.093 3.907 18 C -0.097 4.097 19 C 0.053 3.947 20 N -0.415 5.415 21 H 0.056 0.944 22 H 0.030 0.970 23 H 0.092 0.908 24 H 0.052 0.948 25 H 0.109 0.891 26 H 0.284 0.716 27 H 0.169 0.831 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 -12.884 16.077 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.038 4.038 3 N -0.164 5.164 4 C -0.461 4.461 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.538 5.538 8 Si 0.779 3.221 9 H -0.158 1.158 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.285 3.715 13 O -0.493 6.493 14 C -0.121 4.121 15 C -0.061 4.061 16 N -0.173 5.173 17 C -0.050 4.050 18 C -0.154 4.154 19 C -0.111 4.111 20 N -0.133 5.133 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.111 0.889 24 H 0.070 0.930 25 H 0.127 0.873 26 H 0.094 0.906 27 H 0.186 0.814 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.866 -12.288 15.776 20.839 hybrid contribution 0.635 0.345 -0.693 1.001 sum -5.231 -11.943 15.083 19.937 Atomic orbital electron populations 1.21829 0.93795 1.02836 1.00516 1.22399 0.97197 0.82382 1.01859 1.43810 1.54997 1.13502 1.04114 1.18753 1.39511 0.97912 0.89894 0.93164 1.26226 0.95397 1.02928 0.94075 1.69743 1.41141 1.41782 1.01117 0.85761 0.78658 0.79089 0.78604 1.15772 1.20861 1.19365 1.18314 0.82884 0.86899 0.83441 1.90613 1.49469 1.22438 1.86763 1.21917 1.00745 0.94426 0.94976 1.23562 0.95379 1.00024 0.87121 1.68505 1.09790 1.10604 1.28403 1.23425 0.91627 0.90560 0.99400 1.20897 1.03712 1.00852 0.89963 1.24640 0.97335 1.02122 0.87017 1.68955 1.06551 1.07138 1.30609 0.92462 0.95123 0.88911 0.93026 0.87307 0.90559 0.81354 0.88069 0.90234 0.86733 0.76154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.57 71.98 0.69 -3.93 16 2 C 0.08 3.45 4.28 86.38 0.37 3.82 16 3 N -0.45 -23.24 2.16 -638.69 -1.38 -24.61 16 4 C -0.33 -20.23 9.33 84.13 0.79 -19.44 16 5 H 0.05 3.52 8.01 -2.91 -0.02 3.50 16 6 C 0.02 1.01 5.39 84.98 0.46 1.47 16 7 N -0.90 -54.03 13.95 21.69 0.30 -53.73 16 8 Si 0.96 43.41 24.83 68.60 1.70 45.11 16 9 H -0.23 -9.16 6.59 99.48 0.66 -8.51 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.50 25.44 7.59 86.82 0.66 26.10 16 13 O -0.61 -35.75 16.30 -3.93 -0.06 -35.82 16 14 C 0.02 0.66 6.54 41.85 0.27 0.94 16 15 C 0.10 3.45 10.78 84.97 0.92 4.36 16 16 N -0.46 -13.25 10.41 -182.15 -1.90 -15.15 16 17 C 0.09 1.96 6.79 42.62 0.29 2.25 16 18 C -0.10 -1.00 10.19 71.23 0.73 -0.27 16 19 C 0.05 1.11 10.88 84.81 0.92 2.03 16 20 N -0.41 -13.11 4.29 -184.38 -0.79 -13.90 16 21 H 0.06 1.98 6.48 -2.39 -0.02 1.96 16 22 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.05 2.20 3.13 -2.39 -0.01 2.20 16 25 H 0.11 4.06 5.51 -2.39 -0.01 4.04 16 26 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.17 6.09 7.66 -2.91 -0.02 6.07 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.11 0.47 8.08 -2.39 -0.02 0.45 16 31 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -77.30 261.90 5.06 -72.24 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.10 Total: 8.54 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.09 Total: 17.32 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.76 Total: -107.39 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.06 Total: -35.82 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.70 Total: 45.11 kcal Total: -77.30 5.06 -72.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241699.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.169 kcal (2) G-P(sol) polarization free energy of solvation -77.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds