Wall clock time and date at job start Sun Mar 29 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47256 * 2 1 4 4 C 1.46499 * 120.00346 * 85.04335 * 3 2 1 5 5 C 1.50697 * 109.46701 * 96.65987 * 4 3 2 6 6 H 1.08001 * 120.00180 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00163 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00383 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99386 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47076 * 90.00194 * 9 7 5 11 11 H 1.48503 * 109.46864 * 209.99750 * 9 7 5 12 12 H 1.48498 * 109.47544 * 330.00213 * 9 7 5 13 13 C 1.34783 * 119.99630 * 265.04983 * 3 2 1 14 14 O 1.21510 * 119.99924 * 5.79047 * 13 3 2 15 15 C 1.48147 * 119.99637 * 185.79391 * 13 3 2 16 16 C 1.39441 * 120.09751 * 175.71001 * 15 13 3 17 17 N 1.32083 * 119.87668 * 180.02562 * 16 15 13 18 18 C 1.32138 * 120.06901 * 0.02562 * 17 16 15 19 19 C 1.38729 * 120.19608 * 0.02562 * 18 17 16 20 20 N 1.31797 * 120.12865 * 359.71731 * 19 18 17 21 21 H 1.08994 * 109.47216 * 59.99996 * 1 2 3 22 22 H 1.09003 * 109.46593 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46697 * 299.99851 * 1 2 3 24 24 H 1.09003 * 109.47131 * 240.00007 * 2 1 3 25 25 H 1.09007 * 109.47486 * 119.99993 * 2 1 3 26 26 H 1.08997 * 109.47473 * 216.66308 * 4 3 2 27 27 H 1.08999 * 109.47064 * 336.66833 * 4 3 2 28 28 H 0.97001 * 120.00297 * 179.97438 * 8 7 5 29 29 H 1.08007 * 120.06154 * 359.97438 * 16 15 13 30 30 H 1.07996 * 119.89824 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.93687 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1592 2.1084 1.2639 5 6 3.5874 2.0212 1.7371 6 1 4.3171 1.4787 1.1543 7 6 3.9624 2.6340 2.9140 8 7 5.2085 2.5575 3.3272 9 14 2.6999 3.5716 3.9222 10 1 2.0606 2.6503 4.8956 11 1 3.3717 4.6758 4.6535 12 1 1.6640 4.1341 3.0191 13 6 2.3380 1.9829 -1.1629 14 8 2.1226 1.4195 -2.2178 15 6 2.9519 3.3312 -1.1550 16 6 3.3653 3.9183 -2.3503 17 7 3.9126 5.1204 -2.3382 18 6 4.0685 5.7653 -1.1955 19 6 3.6592 5.1835 -0.0044 20 7 3.1076 3.9865 -0.0081 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8894 3.1537 1.1138 27 1 1.5010 1.6671 2.0123 28 1 5.4724 2.9889 4.1549 29 1 3.2390 3.3908 -3.2843 30 1 4.5159 6.7482 -1.1887 31 1 3.7891 5.7142 0.9272 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208261.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:35 Heat of formation + Delta-G solvation = 34.961547 kcal Electronic energy + Delta-G solvation = -16831.904717 eV Core-core repulsion = 14114.708030 eV Total energy + Delta-G solvation = -2717.196687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78499 -38.80320 -35.52316 -33.89730 -32.59942 -31.46237 -30.27011 -27.64778 -25.08995 -24.14130 -22.70964 -22.34529 -19.23870 -17.33271 -16.99370 -16.65129 -16.35674 -15.44191 -14.87274 -14.64690 -14.11271 -13.75505 -13.47801 -13.12927 -12.61015 -12.44797 -12.30092 -12.02688 -11.72154 -10.97906 -10.93826 -10.76014 -10.60240 -10.33453 -10.10947 -9.75299 -9.51578 -9.03812 -8.64587 -8.29612 -7.77626 -6.12721 -4.06638 0.85391 1.53608 3.20813 3.25919 3.29782 3.33288 3.63803 4.28798 4.35303 4.47130 4.61121 4.87248 5.16741 5.22884 5.44798 5.56932 5.62276 5.67999 5.77993 5.87566 6.15193 6.27830 6.50687 6.53443 6.64320 7.04431 7.38709 7.58263 7.59363 8.02869 8.15288 8.44899 8.74989 8.90496 9.48365 11.00406 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.013991 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.142071 B = 2000.747209 C = 3200.230025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.569 5.569 4 C 0.199 3.801 5 C -0.499 4.499 6 H 0.069 0.931 7 C 0.077 3.923 8 N -0.899 5.899 9 Si 0.868 3.132 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.260 1.260 13 C 0.572 3.428 14 O -0.562 6.562 15 C 0.035 3.965 16 C 0.095 3.905 17 N -0.454 5.454 18 C 0.058 3.942 19 C 0.042 3.958 20 N -0.345 5.345 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.263 0.737 29 H 0.174 0.826 30 H 0.166 0.834 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 3.443 -4.832 8.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.297 5.297 4 C 0.079 3.921 5 C -0.539 4.539 6 H 0.087 0.913 7 C -0.125 4.125 8 N -0.538 5.538 9 Si 0.696 3.304 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.185 1.185 13 C 0.358 3.642 14 O -0.443 6.443 15 C -0.106 4.106 16 C -0.065 4.065 17 N -0.169 5.169 18 C -0.103 4.103 19 C -0.119 4.119 20 N -0.062 5.062 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.191 0.809 30 H 0.184 0.816 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.135 3.172 -5.215 8.654 hybrid contribution -0.246 0.558 0.985 1.159 sum -6.381 3.730 -4.230 8.516 Atomic orbital electron populations 1.22114 0.96506 1.01529 1.02042 1.21397 0.93689 0.83092 1.03070 1.47949 1.60612 1.13385 1.07785 1.20405 0.97953 0.93870 0.79915 1.21174 0.93376 1.32693 1.06611 0.91315 1.24743 0.94897 0.95735 0.97134 1.69905 1.16620 1.44511 1.22760 0.86968 0.82370 0.80394 0.80717 1.20394 1.21188 1.18482 1.17659 0.78358 0.84208 0.83927 1.90690 1.56741 1.65810 1.31055 1.22168 1.00595 0.96977 0.90850 1.23640 0.92480 0.91304 0.99065 1.68522 1.11527 1.07656 1.29148 1.23928 0.96280 1.00590 0.89472 1.23972 0.95870 0.92610 0.99448 1.69391 1.06759 1.04755 1.25273 0.92641 0.92069 0.92600 0.90456 0.90160 0.90997 0.96226 0.92681 0.80920 0.81646 0.81578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.96 6.11 -4.04 -0.02 1.94 16 3 N -0.57 -11.93 2.48 -176.06 -0.44 -12.37 16 4 C 0.20 4.50 3.85 -5.20 -0.02 4.48 16 5 C -0.50 -13.14 8.19 -34.44 -0.28 -13.42 16 6 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -25.99 13.96 55.43 0.77 -25.22 16 9 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 13 C 0.57 12.16 7.60 -12.19 -0.09 12.06 16 14 O -0.56 -12.25 15.92 5.36 0.09 -12.17 16 15 C 0.03 0.70 6.58 -82.84 -0.54 0.16 16 16 C 0.10 1.69 10.77 -17.00 -0.18 1.50 16 17 N -0.45 -7.56 10.49 -12.71 -0.13 -7.69 16 18 C 0.06 0.86 11.23 -17.24 -0.19 0.66 16 19 C 0.04 0.72 11.22 -17.38 -0.20 0.52 16 20 N -0.34 -7.06 5.02 -9.61 -0.05 -7.11 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 1.37 7.36 -51.93 -0.38 0.98 16 25 H 0.08 1.39 8.11 -51.92 -0.42 0.97 16 26 H 0.07 1.64 4.59 -51.93 -0.24 1.41 16 27 H 0.02 0.43 7.45 -51.93 -0.39 0.05 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.17 2.78 7.66 -52.48 -0.40 2.38 16 30 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.17 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 269.40 15.07 4.06 4.06 Total: -1.00 -30.86 269.40 -5.15 -36.01 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.53 Total: 1.49 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.25 Total: 7.82 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.16 Total: -52.39 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.86 -5.15 -36.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208261.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.974 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds