Wall clock time and date at job start Sun Mar 29 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47256 * 2 1 4 4 C 1.46499 * 120.00346 * 85.04335 * 3 2 1 5 5 C 1.50697 * 109.46701 * 96.65987 * 4 3 2 6 6 H 1.08001 * 120.00180 * 0.02562 * 5 4 3 7 7 C 1.37885 * 120.00163 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00383 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99386 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47076 * 90.00194 * 9 7 5 11 11 H 1.48503 * 109.46864 * 209.99750 * 9 7 5 12 12 H 1.48498 * 109.47544 * 330.00213 * 9 7 5 13 13 C 1.34783 * 119.99630 * 265.04983 * 3 2 1 14 14 O 1.21510 * 119.99924 * 5.79047 * 13 3 2 15 15 C 1.48147 * 119.99637 * 185.79391 * 13 3 2 16 16 C 1.39441 * 120.09751 * 175.71001 * 15 13 3 17 17 N 1.32083 * 119.87668 * 180.02562 * 16 15 13 18 18 C 1.32138 * 120.06901 * 0.02562 * 17 16 15 19 19 C 1.38729 * 120.19608 * 0.02562 * 18 17 16 20 20 N 1.31797 * 120.12865 * 359.71731 * 19 18 17 21 21 H 1.08994 * 109.47216 * 59.99996 * 1 2 3 22 22 H 1.09003 * 109.46593 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46697 * 299.99851 * 1 2 3 24 24 H 1.09003 * 109.47131 * 240.00007 * 2 1 3 25 25 H 1.09007 * 109.47486 * 119.99993 * 2 1 3 26 26 H 1.08997 * 109.47473 * 216.66308 * 4 3 2 27 27 H 1.08999 * 109.47064 * 336.66833 * 4 3 2 28 28 H 0.97001 * 120.00297 * 179.97438 * 8 7 5 29 29 H 1.08007 * 120.06154 * 359.97438 * 16 15 13 30 30 H 1.07996 * 119.89824 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.93687 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1592 2.1084 1.2639 5 6 3.5874 2.0212 1.7371 6 1 4.3171 1.4787 1.1543 7 6 3.9624 2.6340 2.9140 8 7 5.2085 2.5575 3.3272 9 14 2.6999 3.5716 3.9222 10 1 2.0606 2.6503 4.8956 11 1 3.3717 4.6758 4.6535 12 1 1.6640 4.1341 3.0191 13 6 2.3380 1.9829 -1.1629 14 8 2.1226 1.4195 -2.2178 15 6 2.9519 3.3312 -1.1550 16 6 3.3653 3.9183 -2.3503 17 7 3.9126 5.1204 -2.3382 18 6 4.0685 5.7653 -1.1955 19 6 3.6592 5.1835 -0.0044 20 7 3.1076 3.9865 -0.0081 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8894 3.1537 1.1138 27 1 1.5010 1.6671 2.0123 28 1 5.4724 2.9889 4.1549 29 1 3.2390 3.3908 -3.2843 30 1 4.5159 6.7482 -1.1887 31 1 3.7891 5.7142 0.9272 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208261.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:35 Heat of formation + Delta-G solvation = 14.117223 kcal Electronic energy + Delta-G solvation = -16832.808595 eV Core-core repulsion = 14114.708030 eV Total energy + Delta-G solvation = -2718.100565 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20473 -40.36206 -37.17458 -35.29340 -34.55588 -32.88681 -31.73335 -29.47439 -26.49977 -25.51760 -24.49185 -23.83046 -20.78670 -19.03854 -18.74130 -18.16487 -17.73798 -16.99309 -16.47980 -16.19784 -15.75446 -15.20178 -14.93060 -14.69683 -14.29382 -14.02519 -13.77884 -13.47908 -13.17122 -12.67274 -12.57810 -12.20831 -12.03651 -11.99756 -11.69075 -11.61234 -11.30369 -10.66633 -10.40491 -9.75450 -9.44647 -8.18237 -6.18074 -0.52453 0.16673 1.42812 1.45436 1.57195 1.71626 2.12400 2.43832 2.85796 3.10029 3.20456 3.28990 3.53199 3.74717 4.15300 4.25254 4.34510 4.37587 4.52141 4.58248 4.74538 4.93322 4.98545 5.16083 5.30713 5.41391 5.59222 5.75606 6.19771 6.26710 6.51046 6.74797 6.80342 7.13322 7.42589 8.98886 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.013991 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.142071 B = 2000.747209 C = 3200.230025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.102 3.898 3 N -0.578 5.578 4 C 0.211 3.789 5 C -0.493 4.493 6 H 0.015 0.985 7 C 0.027 3.973 8 N -0.951 5.951 9 Si 0.934 3.066 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.238 1.238 13 C 0.565 3.435 14 O -0.577 6.577 15 C 0.005 3.995 16 C 0.099 3.901 17 N -0.458 5.458 18 C 0.083 3.917 19 C 0.032 3.968 20 N -0.379 5.379 21 H 0.047 0.953 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.183 0.817 30 H 0.217 0.783 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 5.131 -4.717 10.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 N -0.306 5.306 4 C 0.089 3.911 5 C -0.532 4.532 6 H 0.033 0.967 7 C -0.170 4.170 8 N -0.592 5.592 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.161 1.161 13 C 0.352 3.648 14 O -0.458 6.458 15 C -0.134 4.134 16 C -0.060 4.060 17 N -0.173 5.173 18 C -0.078 4.078 19 C -0.131 4.131 20 N -0.096 5.096 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.200 0.800 30 H 0.233 0.767 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.497 4.816 -5.129 10.282 hybrid contribution 0.284 0.071 0.857 0.906 sum -7.213 4.888 -4.272 9.704 Atomic orbital electron populations 1.22021 0.93807 1.03436 1.01728 1.21612 0.95904 0.81639 1.02822 1.48043 1.60887 1.14426 1.07240 1.20183 0.95514 0.94678 0.80696 1.21145 0.94138 1.31793 1.06092 0.96712 1.25504 0.96691 0.96613 0.98190 1.70063 1.19138 1.46402 1.23619 0.85919 0.80093 0.79025 0.79167 1.20036 1.20813 1.16117 1.17970 0.78105 0.84892 0.83802 1.90657 1.57424 1.66470 1.31291 1.22087 1.02612 0.96954 0.91775 1.23763 0.91847 0.91714 0.98677 1.68655 1.11529 1.07167 1.29934 1.24671 0.93538 1.01683 0.87916 1.24464 0.95455 0.91789 1.01356 1.69164 1.08118 1.06398 1.25914 0.93411 0.89076 0.92312 0.90902 0.90230 0.90389 0.95153 0.92675 0.79999 0.76656 0.79501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 10.24 71.98 0.74 -3.53 16 2 C 0.10 3.62 6.11 86.38 0.53 4.14 16 3 N -0.58 -24.37 2.48 -829.22 -2.05 -26.42 16 4 C 0.21 9.43 3.85 85.63 0.33 9.76 16 5 C -0.49 -26.42 8.19 25.60 0.21 -26.21 16 6 H 0.01 0.92 8.06 -2.91 -0.02 0.90 16 7 C 0.03 1.47 5.47 84.66 0.46 1.93 16 8 N -0.95 -56.10 13.96 21.45 0.30 -55.80 16 9 Si 0.93 40.08 27.47 68.60 1.88 41.96 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.24 -9.28 6.54 99.48 0.65 -8.62 16 13 C 0.57 24.29 7.60 86.87 0.66 24.95 16 14 O -0.58 -25.40 15.92 -3.75 -0.06 -25.46 16 15 C 0.01 0.21 6.58 41.89 0.28 0.48 16 16 C 0.10 3.42 10.77 84.95 0.92 4.33 16 17 N -0.46 -14.18 10.49 -194.12 -2.04 -16.22 16 18 C 0.08 2.18 11.23 84.76 0.95 3.13 16 19 C 0.03 1.01 11.22 84.82 0.95 1.96 16 20 N -0.38 -15.21 5.02 -184.33 -0.92 -16.13 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.07 2.61 7.36 -2.39 -0.02 2.59 16 25 H 0.08 2.77 8.11 -2.38 -0.02 2.75 16 26 H 0.08 3.46 4.59 -2.39 -0.01 3.45 16 27 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.18 5.78 7.66 -2.91 -0.02 5.76 16 30 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.19 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -68.13 269.40 4.21 -63.92 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.08 Total: 13.20 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 6.02 Total: 20.96 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.71 Total: -114.57 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.06 Total: -25.46 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.88 Total: 41.96 kcal Total: -68.13 4.21 -63.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208261.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.036 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds