Wall clock time and date at job start Sun Mar 29 2020 22:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.50698 * 109.47108 * 119.99938 * 2 1 3 5 5 H 1.07994 * 120.00324 * 120.00340 * 4 2 1 6 6 C 1.37877 * 120.00038 * 299.99939 * 4 2 1 7 7 N 1.31516 * 120.00440 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99875 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46985 * 90.00248 * 8 6 4 10 10 H 1.48501 * 109.47035 * 209.99660 * 8 6 4 11 11 H 1.48497 * 109.47223 * 330.00318 * 8 6 4 12 12 N 1.46498 * 109.47080 * 239.99878 * 2 1 3 13 13 C 1.46495 * 120.00114 * 299.99650 * 12 2 1 14 14 C 1.34780 * 119.99868 * 119.99610 * 12 2 1 15 15 O 1.21511 * 119.99990 * 5.58251 * 14 12 2 16 16 C 1.48148 * 119.99755 * 185.57939 * 14 12 2 17 17 C 1.39452 * 120.09517 * 186.40579 * 16 14 12 18 18 N 1.32077 * 119.87082 * 180.02562 * 17 16 14 19 19 C 1.32132 * 120.07525 * 359.97438 * 18 17 16 20 20 C 1.38732 * 120.19418 * 0.02562 * 19 18 17 21 21 N 1.31800 * 120.12591 * 359.71113 * 20 19 18 22 22 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46867 * 300.00016 * 1 2 3 24 24 H 1.09002 * 109.47126 * 60.00399 * 1 2 3 25 25 H 0.97001 * 120.00127 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.46722 * 95.40008 * 13 12 2 27 27 H 1.08993 * 109.47241 * 215.40241 * 13 12 2 28 28 H 1.08996 * 109.47266 * 335.40559 * 13 12 2 29 29 H 1.08002 * 120.06066 * 359.97438 * 17 16 14 30 30 H 1.08003 * 119.90362 * 180.02562 * 19 18 17 31 31 H 1.08001 * 119.93645 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8469 2.1765 1.4920 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7931 -0.0356 -2.0834 15 8 3.1705 1.0941 -1.8427 16 6 3.1848 -0.6930 -3.3519 17 6 4.0926 -0.0728 -4.2097 18 7 4.4382 -0.6626 -5.3398 19 6 3.9254 -1.8383 -5.6569 20 6 3.0220 -2.4580 -4.8057 21 7 2.6756 -1.8788 -3.6736 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.9040 -0.5273 4.4376 26 1 0.7920 -2.1449 -2.0793 27 1 2.5020 -2.6058 -1.9009 28 1 1.4360 -2.5724 -0.4760 29 1 4.5115 0.8884 -3.9508 30 1 4.2103 -2.3184 -6.5815 31 1 2.6057 -3.4192 -5.0688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442675.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:38 Heat of formation + Delta-G solvation = 40.117526 kcal Electronic energy + Delta-G solvation = -16470.031283 eV Core-core repulsion = 13753.058176 eV Total energy + Delta-G solvation = -2716.973107 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24529 -38.91457 -35.69932 -34.50465 -32.69213 -31.69758 -30.20827 -26.34946 -25.39949 -24.98860 -24.54556 -21.72877 -19.15179 -17.74020 -17.08837 -16.93019 -16.36061 -15.75716 -15.18187 -14.96545 -14.49145 -13.84708 -13.35811 -12.90562 -12.74498 -12.39567 -12.38175 -12.17222 -11.77015 -11.43457 -11.13379 -10.86138 -10.68114 -10.18526 -9.86172 -9.62087 -9.48848 -9.32120 -8.86926 -8.65092 -7.78155 -6.16192 -4.17322 0.40989 0.97151 3.03958 3.22648 3.36083 3.38010 3.47716 3.86357 4.06703 4.11310 4.33634 4.40658 4.78844 5.08784 5.13462 5.18732 5.43139 6.01269 6.14510 6.19936 6.23057 6.28607 6.43429 6.61962 6.79467 7.03878 7.06518 7.29131 7.57236 7.59438 8.09324 8.40745 8.69422 8.85419 9.43900 10.96398 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047018 B = 0.006714 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.377667 B = 4169.603789 C = 4329.714329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.227 3.773 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.560 5.560 13 C 0.093 3.907 14 C 0.557 3.443 15 O -0.542 6.542 16 C 0.044 3.956 17 C 0.104 3.896 18 N -0.444 5.444 19 C 0.059 3.941 20 C 0.040 3.960 21 N -0.402 5.402 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.266 0.734 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.182 0.818 30 H 0.171 0.829 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -3.698 -16.016 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.125 3.875 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.288 5.288 13 C -0.050 4.050 14 C 0.341 3.659 15 O -0.420 6.420 16 C -0.097 4.097 17 C -0.056 4.056 18 N -0.158 5.158 19 C -0.101 4.101 20 C -0.121 4.121 21 N -0.121 5.121 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.199 0.801 30 H 0.188 0.812 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.323 -3.090 -15.610 15.917 hybrid contribution -0.642 0.477 0.193 0.823 sum -0.965 -2.613 -15.417 15.667 Atomic orbital electron populations 1.22448 0.98696 1.01350 0.99286 1.19412 0.90190 0.95217 0.82669 0.91843 1.21123 1.32846 1.14323 0.88350 0.90210 1.24858 0.95639 0.96595 0.95565 1.69871 1.45087 1.40160 0.97985 0.86914 0.80438 0.83791 0.77547 1.20339 1.22064 1.18779 1.47829 1.46816 1.12478 1.21709 1.21928 1.00393 0.81396 1.01292 1.17660 0.80210 0.85656 0.82372 1.90754 1.55587 1.18606 1.77037 1.22558 0.96860 0.92511 0.97761 1.23832 0.92661 1.00395 0.88703 1.68587 1.22068 1.08969 1.16154 1.24013 0.93682 0.91999 1.00436 1.23983 0.96160 1.01357 0.90611 1.69044 1.20700 1.07269 1.15045 0.92353 0.93008 0.94808 0.92373 0.93370 0.90735 0.90533 0.80104 0.81161 0.80878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.67 37.16 0.32 -3.14 16 2 C 0.23 5.51 2.22 -69.08 -0.15 5.36 16 3 H 0.06 1.69 5.97 -51.93 -0.31 1.38 16 4 C -0.53 -14.66 8.54 -34.44 -0.29 -14.95 16 5 H 0.08 2.39 7.67 -52.49 -0.40 1.98 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 8 Si 0.88 21.73 24.37 -169.99 -4.14 17.59 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.56 -11.96 2.75 -176.27 -0.49 -12.44 16 13 C 0.09 1.66 8.06 59.84 0.48 2.14 16 14 C 0.56 11.51 7.65 -12.19 -0.09 11.42 16 15 O -0.54 -12.64 15.71 5.36 0.08 -12.55 16 16 C 0.04 0.73 6.56 -82.84 -0.54 0.18 16 17 C 0.10 1.52 10.77 -16.99 -0.18 1.33 16 18 N -0.44 -5.71 10.49 -12.71 -0.13 -5.85 16 19 C 0.06 0.58 11.23 -17.24 -0.19 0.38 16 20 C 0.04 0.41 11.22 -17.38 -0.20 0.21 16 21 N -0.40 -5.69 6.36 -9.61 -0.06 -5.75 16 22 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 23 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.05 0.76 8.00 -51.93 -0.42 0.35 16 27 H 0.07 1.24 5.79 -51.93 -0.30 0.93 16 28 H 0.08 1.46 7.11 -51.93 -0.37 1.09 16 29 H 0.18 2.53 7.66 -52.49 -0.40 2.13 16 30 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 260.23 15.07 3.92 3.92 Total: -1.00 -32.68 260.23 -4.21 -36.89 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.22 Total: -0.74 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.95 Total: 5.02 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.09 Total: -50.12 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.68 -4.21 -36.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442675.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.010 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds