Wall clock time and date at job start Sun Mar 29 2020 22:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00181 * 2 1 4 4 C 1.39196 * 119.99765 * 180.02562 * 2 1 3 5 5 C 1.39452 * 120.82940 * 174.33962 * 4 2 1 6 6 C 1.38226 * 119.28508 * 180.02562 * 5 4 2 7 7 N 1.31655 * 121.00072 * 0.02562 * 6 5 4 8 8 C 1.32901 * 121.81428 * 359.65872 * 7 6 5 9 9 C 1.48022 * 119.69575 * 180.31698 * 8 7 6 10 10 O 1.21570 * 119.99883 * 180.30601 * 9 8 7 11 11 N 1.34777 * 120.00285 * 0.31112 * 9 8 7 12 12 C 1.36788 * 119.99866 * 180.02562 * 11 9 8 13 13 H 1.07997 * 120.00328 * 359.97438 * 12 11 9 14 14 C 1.39107 * 119.99808 * 179.97438 * 12 11 9 15 15 N 1.31331 * 119.99753 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00012 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46777 * 60.00308 * 16 14 12 18 18 H 1.48504 * 109.46985 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47447 * 300.00254 * 16 14 12 20 20 C 1.39133 * 120.60321 * 0.62786 * 8 7 6 21 21 H 1.08996 * 109.47291 * 185.04959 * 1 2 3 22 22 H 1.08999 * 109.46903 * 305.04633 * 1 2 3 23 23 H 1.08998 * 109.47415 * 65.04410 * 1 2 3 24 24 H 1.08994 * 109.47357 * 270.00496 * 3 2 1 25 25 H 1.09006 * 109.46838 * 30.00919 * 3 2 1 26 26 H 1.08997 * 109.46817 * 149.99977 * 3 2 1 27 27 H 1.08004 * 120.35738 * 359.97438 * 5 4 2 28 28 H 1.07997 * 119.49734 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99506 * 359.97438 * 11 9 8 30 30 H 0.96997 * 119.99952 * 179.97438 * 15 14 12 31 31 H 1.08002 * 120.52339 * 179.68961 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1610 -1.2055 -0.0005 5 6 3.5503 -1.2286 -0.1187 6 6 4.2090 -2.4438 -0.1161 7 7 3.5446 -3.5750 -0.0045 8 6 2.2214 -3.6013 0.1166 9 6 1.5226 -4.8998 0.2460 10 8 0.3119 -4.9306 0.3515 11 7 2.2285 -6.0479 0.2470 12 6 1.5826 -7.2478 0.3661 13 1 0.5070 -7.2751 0.4597 14 6 2.3112 -8.4328 0.3666 15 7 3.6191 -8.3995 0.2522 16 14 1.4292 -10.0713 0.5299 17 1 0.4776 -10.2358 -0.5982 18 1 2.4240 -11.1736 0.5037 19 1 0.6851 -10.1072 1.8145 20 6 1.4864 -2.4199 0.1163 21 1 -0.3634 -1.0236 0.0904 22 1 -0.3633 0.5901 0.8413 23 1 -0.3634 0.4336 -0.9317 24 1 2.3792 1.5834 -1.0276 25 1 1.6085 2.0283 0.5140 26 1 3.1499 1.1383 0.5138 27 1 4.1056 -0.3070 -0.2120 28 1 5.2848 -2.4658 -0.2078 29 1 3.1945 -6.0233 0.1625 30 1 4.1271 -9.2257 0.2530 31 1 0.4107 -2.4431 0.2098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126428059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:42 Heat of formation + Delta-G solvation = 11.666079 kcal Electronic energy + Delta-G solvation = -15882.032261 eV Core-core repulsion = 13163.825407 eV Total energy + Delta-G solvation = -2718.206854 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94657 -37.81908 -36.51324 -34.02013 -31.47968 -30.89461 -30.65537 -28.33135 -25.45005 -25.14824 -22.87701 -21.64806 -19.35630 -18.06138 -17.21875 -16.44920 -15.49721 -15.18087 -14.90507 -14.58707 -14.23331 -13.81962 -13.74206 -13.64252 -12.87493 -12.65697 -12.51503 -12.21740 -12.03637 -11.61000 -11.10015 -11.00188 -10.46284 -10.36677 -10.27677 -9.56377 -9.11538 -8.60770 -8.39468 -8.01211 -7.50814 -6.51777 -3.82446 1.37525 1.90601 3.07150 3.19336 3.23417 3.28080 3.80244 4.11492 4.65815 4.72709 4.91530 4.92153 5.19069 5.23568 5.33217 5.36526 5.48247 5.51101 5.56003 5.62158 5.79658 6.02611 6.22833 6.38597 6.43694 7.03901 7.21469 7.45098 7.47968 7.99880 8.47585 8.65896 9.10097 9.53816 10.09443 10.63827 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.005509 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.881707 B = 5081.156311 C = 5611.042840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.633 5.633 3 C 0.096 3.904 4 C 0.239 3.761 5 C -0.260 4.260 6 C 0.138 3.862 7 N -0.507 5.507 8 C 0.155 3.845 9 C 0.463 3.537 10 O -0.603 6.603 11 N -0.517 5.517 12 C -0.296 4.296 13 H 0.108 0.892 14 C 0.026 3.974 15 N -0.877 5.877 16 Si 0.937 3.063 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.271 1.271 20 C -0.208 4.208 21 H 0.084 0.916 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.152 0.848 29 H 0.406 0.594 30 H 0.277 0.723 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 15.523 -0.717 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.346 5.346 3 C -0.047 4.047 4 C 0.130 3.870 5 C -0.286 4.286 6 C -0.022 4.022 7 N -0.222 5.222 8 C 0.018 3.982 9 C 0.250 3.750 10 O -0.490 6.490 11 N -0.149 5.149 12 C -0.427 4.427 13 H 0.126 0.874 14 C -0.179 4.179 15 N -0.515 5.515 16 Si 0.763 3.237 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.234 4.234 21 H 0.103 0.897 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.242 0.758 30 H 0.087 0.913 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.158 14.649 -0.650 14.664 hybrid contribution -0.160 0.213 -0.003 0.266 sum -0.001 14.862 -0.653 14.876 Atomic orbital electron populations 1.21752 0.79234 1.03904 1.00778 1.46165 1.05226 1.02925 1.80270 1.21584 0.97196 0.84862 1.01057 1.17951 0.91352 0.85819 0.91852 1.21590 0.92729 0.99954 1.14322 1.22440 0.99772 0.86974 0.93017 1.67794 1.08462 1.30118 1.15856 1.21412 0.88998 0.94537 0.93276 1.17342 0.86814 0.82751 0.88077 1.90581 1.13199 1.86340 1.58884 1.41870 1.10744 1.04498 1.57831 1.19872 0.94441 0.82242 1.46116 0.87393 1.25472 0.95530 1.00336 0.96598 1.69623 1.05562 1.29770 1.46547 0.85822 0.78706 0.79836 0.79348 1.19571 1.20720 1.19578 1.21552 1.01696 0.90382 1.09765 0.89696 0.92602 0.92958 0.93479 0.91638 0.91303 0.85548 0.83075 0.75785 0.91270 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.63 59.85 0.64 1.57 16 2 N -0.63 -8.01 3.40 -187.37 -0.64 -8.64 16 3 C 0.10 0.86 10.13 59.85 0.61 1.46 16 4 C 0.24 3.82 6.56 -83.63 -0.55 3.27 16 5 C -0.26 -3.80 9.23 -39.13 -0.36 -4.16 16 6 C 0.14 2.26 11.17 -17.63 -0.20 2.06 16 7 N -0.51 -10.62 9.54 -9.90 -0.09 -10.71 16 8 C 0.15 3.50 6.74 -83.06 -0.56 2.94 16 9 C 0.46 12.40 7.76 -12.25 -0.10 12.31 16 10 O -0.60 -17.45 15.89 5.30 0.08 -17.36 16 11 N -0.52 -14.39 5.26 -11.79 -0.06 -14.45 16 12 C -0.30 -8.51 9.68 -15.02 -0.15 -8.65 16 13 H 0.11 3.17 7.15 -52.49 -0.38 2.79 16 14 C 0.03 0.69 5.50 -17.44 -0.10 0.60 16 15 N -0.88 -24.19 13.05 55.50 0.72 -23.47 16 16 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 20 C -0.21 -4.04 8.89 -38.81 -0.35 -4.38 16 21 H 0.08 1.05 5.39 -51.93 -0.28 0.77 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 26 H 0.07 0.58 6.50 -51.93 -0.34 0.24 16 27 H 0.13 1.42 6.43 -52.48 -0.34 1.08 16 28 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 29 H 0.41 11.19 7.22 -40.82 -0.29 10.90 16 30 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.14 2.72 5.45 -52.49 -0.29 2.44 16 LS Contribution 271.30 15.07 4.09 4.09 Total: -1.00 -32.62 271.30 -5.18 -37.80 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.16 Total: 9.90 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -1.11 Total: 7.02 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.07 Total: -57.28 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.08 Total: -17.36 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.62 -5.18 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126428059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.470 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds