Wall clock time and date at job start Sun Mar 29 2020 22:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00181 * 2 1 4 4 C 1.39196 * 119.99765 * 180.02562 * 2 1 3 5 5 C 1.39452 * 120.82940 * 174.33962 * 4 2 1 6 6 C 1.38226 * 119.28508 * 180.02562 * 5 4 2 7 7 N 1.31655 * 121.00072 * 0.02562 * 6 5 4 8 8 C 1.32901 * 121.81428 * 359.65872 * 7 6 5 9 9 C 1.48022 * 119.69575 * 180.31698 * 8 7 6 10 10 O 1.21570 * 119.99883 * 180.30601 * 9 8 7 11 11 N 1.34777 * 120.00285 * 0.31112 * 9 8 7 12 12 C 1.36788 * 119.99866 * 180.02562 * 11 9 8 13 13 H 1.07997 * 120.00328 * 359.97438 * 12 11 9 14 14 C 1.39107 * 119.99808 * 179.97438 * 12 11 9 15 15 N 1.31331 * 119.99753 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00012 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46777 * 60.00308 * 16 14 12 18 18 H 1.48504 * 109.46985 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47447 * 300.00254 * 16 14 12 20 20 C 1.39133 * 120.60321 * 0.62786 * 8 7 6 21 21 H 1.08996 * 109.47291 * 185.04959 * 1 2 3 22 22 H 1.08999 * 109.46903 * 305.04633 * 1 2 3 23 23 H 1.08998 * 109.47415 * 65.04410 * 1 2 3 24 24 H 1.08994 * 109.47357 * 270.00496 * 3 2 1 25 25 H 1.09006 * 109.46838 * 30.00919 * 3 2 1 26 26 H 1.08997 * 109.46817 * 149.99977 * 3 2 1 27 27 H 1.08004 * 120.35738 * 359.97438 * 5 4 2 28 28 H 1.07997 * 119.49734 * 179.97438 * 6 5 4 29 29 H 0.96996 * 119.99506 * 359.97438 * 11 9 8 30 30 H 0.96997 * 119.99952 * 179.97438 * 15 14 12 31 31 H 1.08002 * 120.52339 * 179.68961 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1610 -1.2055 -0.0005 5 6 3.5503 -1.2286 -0.1187 6 6 4.2090 -2.4438 -0.1161 7 7 3.5446 -3.5750 -0.0045 8 6 2.2214 -3.6013 0.1166 9 6 1.5226 -4.8998 0.2460 10 8 0.3119 -4.9306 0.3515 11 7 2.2285 -6.0479 0.2470 12 6 1.5826 -7.2478 0.3661 13 1 0.5070 -7.2751 0.4597 14 6 2.3112 -8.4328 0.3666 15 7 3.6191 -8.3995 0.2522 16 14 1.4292 -10.0713 0.5299 17 1 0.4776 -10.2358 -0.5982 18 1 2.4240 -11.1736 0.5037 19 1 0.6851 -10.1072 1.8145 20 6 1.4864 -2.4199 0.1163 21 1 -0.3634 -1.0236 0.0904 22 1 -0.3633 0.5901 0.8413 23 1 -0.3634 0.4336 -0.9317 24 1 2.3792 1.5834 -1.0276 25 1 1.6085 2.0283 0.5140 26 1 3.1499 1.1383 0.5138 27 1 4.1056 -0.3070 -0.2120 28 1 5.2848 -2.4658 -0.2078 29 1 3.1945 -6.0233 0.1625 30 1 4.1271 -9.2257 0.2530 31 1 0.4107 -2.4431 0.2098 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126428059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:41 Heat of formation + Delta-G solvation = -12.515524 kcal Electronic energy + Delta-G solvation = -15883.080854 eV Core-core repulsion = 13163.825407 eV Total energy + Delta-G solvation = -2719.255447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40218 -39.69288 -37.74962 -36.12126 -33.45450 -32.33015 -32.02955 -29.27308 -27.35353 -26.32444 -24.45808 -22.97983 -21.05588 -20.09967 -18.71413 -17.88855 -16.92907 -16.71859 -16.17437 -16.09979 -15.82279 -15.59052 -15.15509 -14.95718 -14.64169 -14.14475 -13.59570 -13.37963 -13.19398 -12.97660 -12.94243 -12.50451 -12.19005 -12.10797 -11.60457 -11.54397 -10.83947 -10.24267 -10.17053 -10.03215 -8.59857 -8.55984 -6.01555 -0.11350 0.56285 1.41100 1.42851 1.54471 2.04510 2.07191 2.27418 2.95009 3.02296 3.33959 3.61378 3.92573 3.99429 4.22362 4.31082 4.44833 4.52035 4.62798 4.73964 4.79024 4.84857 4.93415 5.00344 5.09241 5.31470 5.64265 5.90745 6.19123 6.33533 6.47526 6.96472 7.13170 7.46896 8.00138 8.60626 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.005509 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.881707 B = 5081.156311 C = 5611.042840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.630 5.630 3 C 0.087 3.913 4 C 0.242 3.758 5 C -0.235 4.235 6 C 0.131 3.869 7 N -0.539 5.539 8 C 0.122 3.878 9 C 0.460 3.540 10 O -0.636 6.636 11 N -0.531 5.531 12 C -0.344 4.344 13 H 0.088 0.912 14 C -0.009 4.009 15 N -0.904 5.904 16 Si 1.007 2.993 17 H -0.267 1.267 18 H -0.265 1.265 19 H -0.267 1.267 20 C -0.215 4.215 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.174 0.826 28 H 0.190 0.810 29 H 0.404 0.596 30 H 0.285 0.715 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 18.011 -0.886 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.340 5.340 3 C -0.054 4.054 4 C 0.130 3.870 5 C -0.260 4.260 6 C -0.027 4.027 7 N -0.255 5.255 8 C -0.014 4.014 9 C 0.248 3.752 10 O -0.525 6.525 11 N -0.163 5.163 12 C -0.474 4.474 13 H 0.106 0.894 14 C -0.212 4.212 15 N -0.543 5.543 16 Si 0.828 3.172 17 H -0.192 1.192 18 H -0.189 1.189 19 H -0.192 1.192 20 C -0.242 4.242 21 H 0.079 0.921 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.191 0.809 28 H 0.207 0.793 29 H 0.240 0.760 30 H 0.094 0.906 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.151 17.199 -0.822 17.257 hybrid contribution -0.444 -0.185 0.027 0.482 sum 0.707 17.013 -0.795 17.046 Atomic orbital electron populations 1.21902 0.78502 1.03081 1.02831 1.46523 1.06058 1.02985 1.78476 1.21911 0.97728 0.83258 1.02545 1.18039 0.92154 0.85928 0.90836 1.22033 0.92099 1.01075 1.10823 1.23119 1.01382 0.86375 0.91843 1.67671 1.07726 1.32859 1.17291 1.20817 0.90194 0.93078 0.97301 1.18146 0.86739 0.84215 0.86148 1.90515 1.14815 1.87430 1.59790 1.41882 1.10500 1.04781 1.59127 1.19906 0.93976 0.83698 1.49789 0.89365 1.26385 0.96288 1.03361 0.95118 1.69692 1.06695 1.31113 1.46765 0.84806 0.77813 0.75235 0.79326 1.19167 1.18878 1.19172 1.21528 1.01352 0.91159 1.10157 0.92078 0.90233 0.91038 0.91982 0.89292 0.90239 0.80901 0.79323 0.76044 0.90556 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 10.63 127.77 1.36 2.90 16 2 N -0.63 -13.73 3.40 -746.72 -2.54 -16.26 16 3 C 0.09 1.10 10.13 127.77 1.29 2.40 16 4 C 0.24 7.17 6.56 38.55 0.25 7.42 16 5 C -0.23 -5.94 9.23 22.56 0.21 -5.74 16 6 C 0.13 3.99 11.17 84.72 0.95 4.94 16 7 N -0.54 -22.74 9.54 -185.24 -1.77 -24.51 16 8 C 0.12 5.71 6.74 41.79 0.28 5.99 16 9 C 0.46 26.13 7.76 86.84 0.67 26.81 16 10 O -0.64 -39.23 15.89 -3.94 -0.06 -39.29 16 11 N -0.53 -31.32 5.26 -309.48 -1.63 -32.95 16 12 C -0.34 -20.87 9.68 84.13 0.81 -20.06 16 13 H 0.09 5.54 7.15 -2.91 -0.02 5.52 16 14 C -0.01 -0.52 5.50 84.98 0.47 -0.05 16 15 N -0.90 -51.09 13.05 21.69 0.28 -50.80 16 16 Si 1.01 43.51 29.55 68.60 2.03 45.54 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 C -0.22 -8.46 8.89 22.77 0.20 -8.26 16 21 H 0.06 1.50 5.39 -2.39 -0.01 1.49 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.09 0.77 8.07 -2.38 -0.02 0.75 16 26 H 0.08 0.87 6.50 -2.39 -0.02 0.85 16 27 H 0.17 2.78 6.43 -2.91 -0.02 2.76 16 28 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.40 23.56 7.22 -92.71 -0.67 22.90 16 30 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.13 5.31 5.45 -2.91 -0.02 5.30 16 Total: -1.00 -75.68 271.30 3.31 -72.36 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.50 Total: 29.56 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 6.50 Total: 16.35 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -5.65 Total: -124.52 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.06 Total: -39.29 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -75.68 3.31 -72.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126428059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.848 kcal (2) G-P(sol) polarization free energy of solvation -75.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds