Wall clock time and date at job start Sun Mar 29 2020 22:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99828 * 2 1 4 4 C 1.50700 * 109.46938 * 270.00055 * 3 2 1 5 5 H 1.07997 * 120.00475 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99352 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00536 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99500 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47210 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47242 * 120.00008 * 8 6 4 11 11 H 1.48500 * 109.47189 * 239.99800 * 8 6 4 12 12 C 1.34770 * 120.00358 * 180.02562 * 2 1 3 13 13 O 1.21593 * 120.00441 * 179.97438 * 12 2 1 14 14 N 1.34780 * 119.99878 * 0.02562 * 12 2 1 15 15 C 1.39970 * 120.00112 * 184.64341 * 14 12 2 16 16 C 1.39277 * 120.48940 * 325.03743 * 15 14 12 17 17 C 1.38497 * 118.36464 * 179.97438 * 16 15 14 18 18 C 1.38275 * 119.23826 * 0.27455 * 17 16 15 19 19 N 1.31855 * 120.91124 * 359.44736 * 18 17 16 20 20 C 1.31823 * 121.80038 * 0.54530 * 19 18 17 21 21 H 1.09001 * 109.46976 * 269.99817 * 1 2 3 22 22 H 1.09002 * 109.46812 * 29.99981 * 1 2 3 23 23 H 1.09003 * 109.46867 * 149.99758 * 1 2 3 24 24 H 1.08996 * 109.47005 * 30.00173 * 3 2 1 25 25 H 1.08997 * 109.47048 * 150.00009 * 3 2 1 26 26 H 0.97003 * 120.00361 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99981 * 4.64096 * 14 12 2 28 28 H 1.08002 * 120.81535 * 359.95321 * 16 15 14 29 29 H 1.08002 * 120.38138 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.54694 * 179.70480 * 18 17 16 31 31 H 1.07994 * 119.67473 * 179.72084 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4388 3.4165 -3.4339 9 1 2.8617 2.4159 -4.3673 10 1 2.8017 4.7374 -3.6676 11 1 4.9014 3.5243 -3.6669 12 6 2.1389 -1.1671 -0.0005 13 8 3.3549 -1.1671 -0.0010 14 7 1.4651 -2.3344 -0.0016 15 6 2.1615 -3.5446 0.0960 16 6 3.4119 -3.6904 -0.4997 17 6 4.0623 -4.9068 -0.3752 18 6 3.4517 -5.9304 0.3258 19 7 2.2690 -5.7586 0.8828 20 6 1.6161 -4.6173 0.7887 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1385 0.5138 26 1 4.0310 4.4436 -0.8503 27 1 0.4975 -2.3357 -0.0699 28 1 3.8631 -2.8750 -1.0457 29 1 5.0334 -5.0554 -0.8239 30 1 3.9523 -6.8826 0.4219 31 1 0.6472 -4.5156 1.2546 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139556689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:45 Heat of formation + Delta-G solvation = 19.165987 kcal Electronic energy + Delta-G solvation = -16077.885754 eV Core-core repulsion = 13360.004120 eV Total energy + Delta-G solvation = -2717.881634 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.55673 -39.04872 -35.27549 -34.59009 -32.64951 -31.91405 -29.77955 -27.72551 -25.90161 -23.82064 -23.41342 -22.18729 -19.58415 -18.08218 -16.92809 -16.75667 -16.52868 -15.84118 -15.07011 -14.72055 -14.18847 -13.82743 -13.75027 -13.15609 -12.94344 -12.72102 -12.28107 -12.05295 -11.90638 -11.26504 -10.94318 -10.65838 -10.57904 -10.20892 -9.75147 -9.67278 -9.54851 -9.09726 -8.48507 -8.18822 -7.69632 -6.08994 -4.14088 1.19784 1.46183 3.06119 3.26705 3.34574 3.38575 3.65286 4.03308 4.31286 4.44935 4.59967 4.97285 5.09441 5.25039 5.26903 5.39159 5.51556 5.68613 5.78949 6.05026 6.22663 6.36814 6.47720 6.69280 7.02375 7.27049 7.41292 7.56943 7.88147 8.03505 8.17008 8.46295 8.86367 9.11890 9.51457 10.98966 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037778 B = 0.005919 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.002559 B = 4729.505617 C = 5133.493737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.610 5.610 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.697 3.303 13 O -0.569 6.569 14 N -0.692 5.692 15 C 0.132 3.868 16 C -0.081 4.081 17 C -0.152 4.152 18 C 0.064 3.936 19 N -0.470 5.470 20 C 0.062 3.938 21 H 0.047 0.953 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.263 0.737 27 H 0.404 0.596 28 H 0.155 0.845 29 H 0.135 0.865 30 H 0.152 0.848 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 -13.300 1.092 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.345 5.345 3 C 0.139 3.861 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.399 3.601 13 O -0.445 6.445 14 N -0.343 5.343 15 C 0.033 3.967 16 C -0.109 4.109 17 C -0.172 4.172 18 C -0.094 4.094 19 N -0.178 5.178 20 C -0.099 4.099 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.241 0.759 28 H 0.172 0.828 29 H 0.153 0.847 30 H 0.170 0.830 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.166 -13.650 1.612 14.683 hybrid contribution 0.045 1.201 -1.478 1.905 sum -5.121 -12.449 0.134 13.462 Atomic orbital electron populations 1.21618 0.81501 1.02461 1.00562 1.47519 1.05846 1.06267 1.74866 1.19290 0.92422 0.76750 0.97610 1.21475 1.36615 1.06318 0.92298 0.92418 1.24931 0.95291 0.96353 0.97482 1.69935 1.38314 1.14344 1.30699 0.86434 0.78119 0.78306 0.84488 1.19854 1.20925 1.20837 1.15940 0.85572 0.80057 0.78542 1.90886 1.11350 1.85481 1.56801 1.42912 1.10117 1.03427 1.77798 1.18660 0.94483 0.86613 0.96985 1.21950 0.94271 0.97899 0.96798 1.22094 1.01179 0.93464 1.00463 1.22592 0.91711 0.99133 0.95948 1.67574 1.08683 1.23136 1.18422 1.22492 1.00882 0.88849 0.97643 0.93460 0.90134 0.93130 0.94630 0.93615 0.92691 0.75873 0.82778 0.84737 0.83026 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.84 16 2 N -0.61 -12.62 2.86 -188.74 -0.54 -13.16 16 3 C 0.26 6.63 5.16 -5.19 -0.03 6.60 16 4 C -0.53 -14.71 9.39 -34.44 -0.32 -15.03 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.70 14.48 8.14 -86.92 -0.71 13.77 16 13 O -0.57 -14.13 13.40 5.28 0.07 -14.06 16 14 N -0.69 -10.86 5.23 -14.12 -0.07 -10.93 16 15 C 0.13 2.03 6.32 -83.53 -0.53 1.50 16 16 C -0.08 -1.31 8.81 -39.10 -0.34 -1.65 16 17 C -0.15 -1.98 10.10 -39.47 -0.40 -2.38 16 18 C 0.06 0.80 11.18 -17.53 -0.20 0.60 16 19 N -0.47 -6.54 10.35 -13.09 -0.14 -6.68 16 20 C 0.06 0.83 11.12 -17.33 -0.19 0.64 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 23 H 0.05 0.58 6.30 -51.93 -0.33 0.26 16 24 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 25 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.40 4.87 6.52 -40.82 -0.27 4.60 16 28 H 0.15 2.87 6.32 -52.49 -0.33 2.54 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 273.04 15.07 4.11 4.11 Total: -1.00 -33.28 273.04 -6.43 -39.71 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.38 Total: 2.39 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -2.20 Total: 7.53 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.01 Total: -56.25 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.06 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.28 -6.43 -39.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139556689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.880 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds