Wall clock time and date at job start Sun Mar 29 2020 22:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99828 * 2 1 4 4 C 1.50700 * 109.46938 * 270.00055 * 3 2 1 5 5 H 1.07997 * 120.00475 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99352 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00536 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99500 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47210 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47242 * 120.00008 * 8 6 4 11 11 H 1.48500 * 109.47189 * 239.99800 * 8 6 4 12 12 C 1.34770 * 120.00358 * 180.02562 * 2 1 3 13 13 O 1.21593 * 120.00441 * 179.97438 * 12 2 1 14 14 N 1.34780 * 119.99878 * 0.02562 * 12 2 1 15 15 C 1.39970 * 120.00112 * 184.64341 * 14 12 2 16 16 C 1.39277 * 120.48940 * 325.03743 * 15 14 12 17 17 C 1.38497 * 118.36464 * 179.97438 * 16 15 14 18 18 C 1.38275 * 119.23826 * 0.27455 * 17 16 15 19 19 N 1.31855 * 120.91124 * 359.44736 * 18 17 16 20 20 C 1.31823 * 121.80038 * 0.54530 * 19 18 17 21 21 H 1.09001 * 109.46976 * 269.99817 * 1 2 3 22 22 H 1.09002 * 109.46812 * 29.99981 * 1 2 3 23 23 H 1.09003 * 109.46867 * 149.99758 * 1 2 3 24 24 H 1.08996 * 109.47005 * 30.00173 * 3 2 1 25 25 H 1.08997 * 109.47048 * 150.00009 * 3 2 1 26 26 H 0.97003 * 120.00361 * 180.02562 * 7 6 4 27 27 H 0.96998 * 119.99981 * 4.64096 * 14 12 2 28 28 H 1.08002 * 120.81535 * 359.95321 * 16 15 14 29 29 H 1.08002 * 120.38138 * 180.02562 * 17 16 15 30 30 H 1.07995 * 119.54694 * 179.70480 * 18 17 16 31 31 H 1.07994 * 119.67473 * 179.72084 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4388 3.4165 -3.4339 9 1 2.8617 2.4159 -4.3673 10 1 2.8017 4.7374 -3.6676 11 1 4.9014 3.5243 -3.6669 12 6 2.1389 -1.1671 -0.0005 13 8 3.3549 -1.1671 -0.0010 14 7 1.4651 -2.3344 -0.0016 15 6 2.1615 -3.5446 0.0960 16 6 3.4119 -3.6904 -0.4997 17 6 4.0623 -4.9068 -0.3752 18 6 3.4517 -5.9304 0.3258 19 7 2.2690 -5.7586 0.8828 20 6 1.6161 -4.6173 0.7887 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 1.6084 2.0284 0.5138 25 1 3.1499 1.1385 0.5138 26 1 4.0310 4.4436 -0.8503 27 1 0.4975 -2.3357 -0.0699 28 1 3.8631 -2.8750 -1.0457 29 1 5.0334 -5.0554 -0.8239 30 1 3.9523 -6.8826 0.4219 31 1 0.6472 -4.5156 1.2546 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139556689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:44 Heat of formation + Delta-G solvation = -4.231352 kcal Electronic energy + Delta-G solvation = -16078.900339 eV Core-core repulsion = 13360.004120 eV Total energy + Delta-G solvation = -2718.896219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.87053 -40.38901 -36.87522 -36.10014 -34.68847 -33.02770 -31.09493 -29.48961 -27.40314 -25.43480 -24.62543 -23.64519 -21.08135 -19.47992 -18.70372 -18.27752 -17.81866 -17.06367 -16.81293 -16.40676 -15.76081 -15.08098 -14.87685 -14.71323 -14.39551 -14.08807 -13.86302 -13.50756 -13.22463 -13.02103 -12.80627 -12.54891 -12.21895 -11.91984 -11.68724 -11.27642 -10.67005 -10.64637 -10.35080 -9.64268 -9.16292 -8.22690 -6.37607 0.12543 0.31751 1.36569 1.38896 1.50028 1.65053 2.11849 2.38474 2.91099 2.99287 3.07615 3.64260 3.93066 4.02386 4.17415 4.26515 4.40907 4.63833 4.71999 4.81806 4.95456 5.13999 5.18675 5.25082 5.34549 5.52533 5.74725 5.85588 6.00931 6.04471 6.71227 6.98062 6.98939 7.29408 7.56067 8.84129 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037778 B = 0.005919 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.002559 B = 4729.505617 C = 5133.493737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.274 3.726 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.269 1.269 11 H -0.282 1.282 12 C 0.693 3.307 13 O -0.620 6.620 14 N -0.670 5.670 15 C 0.107 3.893 16 C -0.107 4.107 17 C -0.149 4.149 18 C 0.073 3.927 19 N -0.482 5.482 20 C 0.074 3.926 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.031 0.969 25 H 0.000 1.000 26 H 0.267 0.733 27 H 0.423 0.577 28 H 0.120 0.880 29 H 0.159 0.841 30 H 0.190 0.810 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 -15.037 0.581 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.153 3.847 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.394 3.606 13 O -0.500 6.500 14 N -0.322 5.322 15 C 0.009 3.991 16 C -0.135 4.135 17 C -0.170 4.170 18 C -0.084 4.084 19 N -0.190 5.190 20 C -0.086 4.086 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.106 0.894 24 H 0.049 0.951 25 H 0.018 0.982 26 H 0.076 0.924 27 H 0.264 0.736 28 H 0.138 0.862 29 H 0.176 0.824 30 H 0.207 0.793 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -6.522 -15.435 1.104 16.793 hybrid contribution 0.459 1.626 -1.271 2.114 sum -6.063 -13.809 -0.166 15.083 Atomic orbital electron populations 1.21934 0.77730 1.04054 1.02847 1.47374 1.08106 1.04765 1.74996 1.18737 0.90991 0.78901 0.96097 1.21727 1.36832 1.06492 0.93032 0.92960 1.25823 0.94886 0.96414 1.01857 1.70046 1.38922 1.14842 1.32935 0.85370 0.77841 0.78383 0.79191 1.19294 1.19364 1.20828 1.16116 0.85101 0.81151 0.78206 1.90852 1.13824 1.86438 1.58912 1.42485 1.10793 1.02010 1.76914 1.18857 0.94773 0.86910 0.98575 1.21888 0.95365 0.98392 0.97899 1.22345 1.01997 0.92358 1.00253 1.23196 0.91081 1.00102 0.94025 1.67705 1.09392 1.23092 1.18855 1.22885 1.01678 0.87727 0.96274 0.90753 0.90685 0.89445 0.95097 0.98180 0.92355 0.73648 0.86210 0.82384 0.79345 0.79902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.13 10.24 127.77 1.31 3.44 16 2 N -0.62 -25.85 2.86 -869.30 -2.48 -28.34 16 3 C 0.27 14.63 5.16 85.63 0.44 15.07 16 4 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.53 5.46 84.66 0.46 0.99 16 7 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 8 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.69 29.32 8.14 179.06 1.46 30.77 16 13 O -0.62 -32.40 13.40 -4.01 -0.05 -32.46 16 14 N -0.67 -20.43 5.23 -316.85 -1.66 -22.09 16 15 C 0.11 3.20 6.32 38.24 0.24 3.45 16 16 C -0.11 -3.49 8.81 22.58 0.20 -3.29 16 17 C -0.15 -3.70 10.10 22.34 0.23 -3.47 16 18 C 0.07 1.61 11.18 84.70 0.95 2.55 16 19 N -0.48 -12.00 10.35 -195.33 -2.02 -14.02 16 20 C 0.07 1.81 11.12 84.84 0.94 2.76 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.07 2.19 8.07 -2.39 -0.02 2.18 16 23 H 0.09 1.77 6.30 -2.39 -0.02 1.75 16 24 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 25 H 0.00 0.00 7.42 -2.39 -0.02 -0.01 16 26 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.42 9.18 6.52 -92.71 -0.60 8.58 16 28 H 0.12 4.76 6.32 -2.91 -0.02 4.75 16 29 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.19 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -75.16 273.04 3.11 -72.06 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.54 Total: 11.98 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 6.47 Total: 21.59 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -5.88 Total: -119.77 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.05 Total: -32.46 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -75.16 3.11 -72.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139556689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.827 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds