Wall clock time and date at job start Sun Mar 29 2020 22:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.56056 * 2 1 4 4 C 1.52995 * 117.49371 * 214.31182 * 2 1 3 5 5 C 1.52992 * 117.49613 * 145.69107 * 2 1 3 6 6 H 1.08998 * 117.49737 * 215.00107 * 5 2 1 7 7 C 1.50703 * 117.50304 * 359.97438 * 5 2 1 8 8 O 1.21303 * 119.99475 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 5 2 10 10 C 1.40597 * 119.99795 * 180.27733 * 9 7 5 11 11 C 1.40649 * 126.08455 * 359.74417 * 10 9 7 12 12 N 1.30903 * 108.38958 * 180.02562 * 11 10 9 13 13 N 1.40077 * 108.40561 * 359.97438 * 12 11 10 14 14 C 1.37318 * 126.07052 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00437 * 179.97438 * 14 13 12 16 16 C 1.38991 * 119.99922 * 359.97438 * 14 13 12 17 17 N 1.31296 * 120.00015 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47250 * 89.99507 * 18 16 14 20 20 H 1.48502 * 109.46711 * 209.99613 * 18 16 14 21 21 H 1.48504 * 109.47009 * 329.99088 * 18 16 14 22 22 C 1.35681 * 126.07780 * 179.43708 * 10 9 7 23 23 H 1.09004 * 109.47293 * 274.31725 * 1 2 3 24 24 H 1.09003 * 109.47405 * 34.30854 * 1 2 3 25 25 H 1.08994 * 109.47468 * 154.30704 * 1 2 3 26 26 H 1.09004 * 117.49624 * 145.02079 * 4 2 1 27 27 H 1.08998 * 117.50247 * 359.97438 * 4 2 1 28 28 H 0.97001 * 119.99727 * 359.97438 * 9 7 5 29 29 H 1.08001 * 125.80134 * 0.02562 * 11 10 9 30 30 H 0.97003 * 120.00035 * 179.97438 * 17 16 14 31 31 H 1.07993 * 126.25084 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2363 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7649 6 1 3.1712 -0.8751 1.2685 7 6 1.3719 -2.1403 1.4612 8 8 0.1635 -2.0524 1.4024 9 7 1.9415 -3.1490 2.1502 10 6 1.1349 -4.1033 2.7949 11 6 -0.2713 -4.1258 2.8090 12 7 -0.6608 -5.1608 3.5093 13 7 0.4765 -5.8379 3.9679 14 6 0.4850 -6.9748 4.7380 15 1 1.4236 -7.4173 5.0372 16 6 -0.7144 -7.5560 5.1323 17 7 -1.8555 -7.0178 4.7689 18 14 -0.7028 -9.1022 6.1804 19 1 -0.6994 -8.7264 7.6171 20 1 -1.9125 -9.9107 5.8831 21 1 0.5125 -9.8988 5.8741 22 6 1.5748 -5.1696 3.5094 23 1 -0.3634 0.0774 1.0248 24 1 -0.3634 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4455 26 1 3.1714 -0.8752 -1.2684 27 1 1.6111 -1.8587 -1.2679 28 1 2.9078 -3.2191 2.1976 29 1 -0.9195 -3.4107 2.3243 30 1 -2.6925 -7.4236 5.0438 31 1 2.6057 -5.4390 3.6853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139709848.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:52 Heat of formation + Delta-G solvation = 71.513807 kcal Electronic energy + Delta-G solvation = -15995.477417 eV Core-core repulsion = 13279.865755 eV Total energy + Delta-G solvation = -2715.611662 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.03465 -39.01061 -36.37112 -34.09552 -33.10176 -30.22199 -28.66229 -27.60379 -25.16707 -23.58762 -21.13542 -20.85517 -19.49682 -19.29815 -17.53149 -16.45963 -15.59095 -15.36454 -14.88339 -14.19260 -14.11180 -13.49250 -13.10732 -12.93115 -12.79017 -12.31836 -12.05768 -11.65056 -11.42126 -11.32909 -11.24719 -10.89449 -10.51964 -10.27896 -10.01573 -9.92028 -9.12629 -8.91979 -8.74981 -8.02574 -6.65040 -6.53193 -4.19894 2.78917 3.02110 3.06255 3.11447 3.59141 3.66369 3.88879 3.98222 4.47698 4.69487 4.79006 4.93608 5.04018 5.05985 5.37619 5.43062 5.71312 5.87639 5.98533 6.11611 6.26384 6.28014 6.51042 6.70191 6.94908 7.00565 7.18883 7.29503 7.89096 8.24663 8.34686 8.68081 8.95611 9.41243 9.70596 10.42963 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.072445 B = 0.005083 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.405544 B = 5506.784494 C = 5804.381190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.186 4.186 6 H 0.118 0.882 7 C 0.526 3.474 8 O -0.531 6.531 9 N -0.623 5.623 10 C -0.058 4.058 11 C -0.034 4.034 12 N -0.261 5.261 13 N -0.144 5.144 14 C -0.324 4.324 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.771 5.771 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.085 4.085 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.396 0.604 29 H 0.176 0.824 30 H 0.274 0.726 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.643 7.748 -5.936 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 H 0.124 0.876 4 C -0.193 4.193 5 C -0.208 4.208 6 H 0.136 0.864 7 C 0.313 3.687 8 O -0.409 6.409 9 N -0.265 5.265 10 C -0.164 4.164 11 C -0.209 4.209 12 N -0.092 5.092 13 N 0.088 4.912 14 C -0.456 4.456 15 H 0.133 0.867 16 C -0.171 4.171 17 N -0.398 5.398 18 Si 0.758 3.242 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.236 4.236 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.229 0.771 29 H 0.193 0.807 30 H 0.085 0.915 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.510 7.111 -5.502 11.101 hybrid contribution 1.531 -0.304 0.274 1.585 sum 8.041 6.808 -5.228 11.762 Atomic orbital electron populations 1.21364 0.91440 1.01263 1.02785 1.22322 0.96708 0.93223 1.01580 0.87556 1.23066 1.02811 1.02061 0.91340 1.22238 1.01850 1.01230 0.95457 0.86432 1.19425 0.88153 0.81529 0.79639 1.90587 1.14385 1.74480 1.61440 1.42506 1.08680 1.25200 1.50075 1.17303 0.91036 0.96710 1.11346 1.24106 0.92416 1.00001 1.04411 1.78242 1.06524 1.07252 1.17206 1.44538 1.02268 1.15890 1.28459 1.19862 0.95355 1.00985 1.29413 0.86673 1.25635 0.94636 0.99476 0.97320 1.70222 0.97681 1.36153 1.35709 0.85835 0.78728 0.79990 0.79625 1.19604 1.20094 1.18829 1.21263 0.92914 0.98946 1.10471 0.91158 0.93749 0.91538 0.88257 0.88233 0.77111 0.80731 0.91502 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.43 37.16 0.31 -1.20 16 2 C -0.12 -1.40 6.41 -90.63 -0.58 -1.98 16 3 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.16 -1.71 9.88 -26.74 -0.26 -1.97 16 5 C -0.19 -2.37 6.19 -91.78 -0.57 -2.94 16 6 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 7 C 0.53 9.35 7.56 -10.98 -0.08 9.27 16 8 O -0.53 -11.23 10.26 5.54 0.06 -11.17 16 9 N -0.62 -11.39 5.47 -10.00 -0.05 -11.44 16 10 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 11 C -0.03 -0.91 10.85 -17.04 -0.18 -1.09 16 12 N -0.26 -7.73 10.40 30.80 0.32 -7.41 16 13 N -0.14 -4.02 3.74 -11.41 -0.04 -4.06 16 14 C -0.32 -8.70 10.25 -14.81 -0.15 -8.85 16 15 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 16 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 17 N -0.77 -21.84 11.81 55.50 0.66 -21.19 16 18 Si 0.93 19.11 29.55 -169.99 -5.02 14.09 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.09 -2.05 11.49 -16.39 -0.19 -2.23 16 23 H 0.07 1.09 7.26 -51.93 -0.38 0.72 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.03 7.02 -51.93 -0.36 0.66 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.22 8.05 -51.93 -0.42 0.81 16 28 H 0.40 5.64 8.83 -40.82 -0.36 5.28 16 29 H 0.18 4.64 5.92 -52.49 -0.31 4.33 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.14 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 269.83 15.07 4.07 4.07 Total: -1.00 -32.87 269.83 -5.89 -38.76 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -3.49 Total: 10.21 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.38 Total: -11.85 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.88 Total: -44.11 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.06 Total: -11.17 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.87 -5.89 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139709848.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.278 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds