Wall clock time and date at job start Sun Mar 29 2020 22:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 115.56056 * 2 1 4 4 C 1.52995 * 117.49371 * 214.31182 * 2 1 3 5 5 C 1.52992 * 117.49613 * 145.69107 * 2 1 3 6 6 H 1.08998 * 117.49737 * 215.00107 * 5 2 1 7 7 C 1.50703 * 117.50304 * 359.97438 * 5 2 1 8 8 O 1.21303 * 119.99475 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 5 2 10 10 C 1.40597 * 119.99795 * 180.27733 * 9 7 5 11 11 C 1.40649 * 126.08455 * 359.74417 * 10 9 7 12 12 N 1.30903 * 108.38958 * 180.02562 * 11 10 9 13 13 N 1.40077 * 108.40561 * 359.97438 * 12 11 10 14 14 C 1.37318 * 126.07052 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00437 * 179.97438 * 14 13 12 16 16 C 1.38991 * 119.99922 * 359.97438 * 14 13 12 17 17 N 1.31296 * 120.00015 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47250 * 89.99507 * 18 16 14 20 20 H 1.48502 * 109.46711 * 209.99613 * 18 16 14 21 21 H 1.48504 * 109.47009 * 329.99088 * 18 16 14 22 22 C 1.35681 * 126.07780 * 179.43708 * 10 9 7 23 23 H 1.09004 * 109.47293 * 274.31725 * 1 2 3 24 24 H 1.09003 * 109.47405 * 34.30854 * 1 2 3 25 25 H 1.08994 * 109.47468 * 154.30704 * 1 2 3 26 26 H 1.09004 * 117.49624 * 145.02079 * 4 2 1 27 27 H 1.08998 * 117.50247 * 359.97438 * 4 2 1 28 28 H 0.97001 * 119.99727 * 359.97438 * 9 7 5 29 29 H 1.08001 * 125.80134 * 0.02562 * 11 10 9 30 30 H 0.97003 * 120.00035 * 179.97438 * 17 16 14 31 31 H 1.07993 * 126.25084 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2363 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7649 6 1 3.1712 -0.8751 1.2685 7 6 1.3719 -2.1403 1.4612 8 8 0.1635 -2.0524 1.4024 9 7 1.9415 -3.1490 2.1502 10 6 1.1349 -4.1033 2.7949 11 6 -0.2713 -4.1258 2.8090 12 7 -0.6608 -5.1608 3.5093 13 7 0.4765 -5.8379 3.9679 14 6 0.4850 -6.9748 4.7380 15 1 1.4236 -7.4173 5.0372 16 6 -0.7144 -7.5560 5.1323 17 7 -1.8555 -7.0178 4.7689 18 14 -0.7028 -9.1022 6.1804 19 1 -0.6994 -8.7264 7.6171 20 1 -1.9125 -9.9107 5.8831 21 1 0.5125 -9.8988 5.8741 22 6 1.5748 -5.1696 3.5094 23 1 -0.3634 0.0774 1.0248 24 1 -0.3634 0.8489 -0.5792 25 1 -0.3634 -0.9260 -0.4455 26 1 3.1714 -0.8752 -1.2684 27 1 1.6111 -1.8587 -1.2679 28 1 2.9078 -3.2191 2.1976 29 1 -0.9195 -3.4107 2.3243 30 1 -2.6925 -7.4236 5.0438 31 1 2.6057 -5.4390 3.6853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139709848.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:52 Heat of formation + Delta-G solvation = 48.921745 kcal Electronic energy + Delta-G solvation = -15996.457083 eV Core-core repulsion = 13279.865755 eV Total energy + Delta-G solvation = -2716.591328 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.74107 -40.60397 -37.57713 -35.81881 -34.93417 -32.24999 -30.10119 -29.13104 -27.01191 -24.96850 -22.84402 -22.11499 -21.25562 -20.78119 -19.30783 -17.77130 -17.42871 -16.99369 -16.26652 -15.76068 -15.70806 -15.01055 -14.87384 -14.73427 -13.97131 -13.56862 -13.42826 -13.25193 -13.10841 -12.89850 -12.82047 -12.31078 -12.08527 -11.82674 -11.11951 -11.00783 -10.90880 -10.82911 -10.34781 -10.10332 -8.50881 -8.47159 -6.24400 1.21450 1.39613 1.51208 1.57903 1.85458 2.06487 2.33055 2.47747 2.92098 2.97317 3.09266 3.73974 3.93645 4.01240 4.28589 4.43575 4.53467 4.61754 4.85599 4.95024 4.99418 5.00232 5.07361 5.15597 5.23305 5.30031 5.49740 5.64328 5.96146 6.32987 6.74179 6.82904 7.44694 7.50370 7.69098 8.52531 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.072445 B = 0.005083 C = 0.004823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.405544 B = 5506.784494 C = 5804.381190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.120 4.120 3 H 0.142 0.858 4 C -0.138 4.138 5 C -0.191 4.191 6 H 0.156 0.844 7 C 0.518 3.482 8 O -0.571 6.571 9 N -0.617 5.617 10 C -0.044 4.044 11 C -0.061 4.061 12 N -0.312 5.312 13 N -0.169 5.169 14 C -0.356 4.356 15 H 0.141 0.859 16 C -0.007 4.007 17 N -0.827 5.827 18 Si 1.020 2.980 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.243 1.243 22 C -0.083 4.083 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.419 0.581 29 H 0.166 0.834 30 H 0.276 0.724 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.816 8.069 -6.184 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 H 0.160 0.840 4 C -0.175 4.175 5 C -0.212 4.212 6 H 0.173 0.827 7 C 0.307 3.693 8 O -0.451 6.451 9 N -0.262 5.262 10 C -0.150 4.150 11 C -0.236 4.236 12 N -0.144 5.144 13 N 0.062 4.938 14 C -0.487 4.487 15 H 0.159 0.841 16 C -0.218 4.218 17 N -0.455 5.455 18 Si 0.839 3.161 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.166 1.166 22 C -0.233 4.233 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.157 0.843 27 H 0.098 0.902 28 H 0.256 0.744 29 H 0.183 0.817 30 H 0.086 0.914 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.745 7.465 -5.774 13.566 hybrid contribution 0.564 -0.266 0.247 0.671 sum 10.309 7.199 -5.527 13.735 Atomic orbital electron populations 1.21288 0.93657 1.00788 1.01098 1.22489 0.95142 0.94890 1.01357 0.83991 1.23179 1.03875 1.00652 0.89797 1.22272 1.02374 1.00081 0.96437 0.82667 1.20519 0.88380 0.81719 0.78708 1.90590 1.16718 1.75318 1.62436 1.42513 1.09441 1.24377 1.49837 1.17403 0.90275 0.97183 1.10148 1.24144 0.94372 0.99939 1.05179 1.78134 1.08722 1.08692 1.18859 1.44841 1.02666 1.16761 1.29531 1.20638 0.96926 1.01245 1.29847 0.84141 1.26902 0.93709 1.03036 0.98174 1.70409 0.98666 1.38515 1.37889 0.84578 0.79260 0.74953 0.77304 1.18857 1.20206 1.16644 1.22007 0.94033 0.98175 1.09127 0.93950 0.91383 0.94389 0.84301 0.90229 0.74437 0.81687 0.91422 0.79523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 8.43 71.98 0.61 -2.39 16 2 C -0.12 -2.46 6.41 -10.80 -0.07 -2.53 16 3 H 0.14 1.96 8.14 -2.39 -0.02 1.95 16 4 C -0.14 -2.55 9.88 30.59 0.30 -2.24 16 5 C -0.19 -4.24 6.19 -11.54 -0.07 -4.31 16 6 H 0.16 2.33 8.14 -2.39 -0.02 2.31 16 7 C 0.52 18.02 7.56 87.66 0.66 18.68 16 8 O -0.57 -24.95 10.26 -3.10 -0.03 -24.99 16 9 N -0.62 -21.71 5.47 -303.92 -1.66 -23.38 16 10 C -0.04 -2.07 6.90 37.73 0.26 -1.81 16 11 C -0.06 -3.44 10.85 85.42 0.93 -2.52 16 12 N -0.31 -19.33 10.40 -56.47 -0.59 -19.92 16 13 N -0.17 -9.59 3.74 -190.02 -0.71 -10.30 16 14 C -0.36 -19.17 10.25 84.01 0.86 -18.31 16 15 H 0.14 6.54 7.83 -2.91 -0.02 6.52 16 16 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 17 N -0.83 -48.68 11.81 21.66 0.26 -48.42 16 18 Si 1.02 39.06 29.55 68.60 2.03 41.09 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 20 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 22 C -0.08 -3.94 11.49 83.37 0.96 -2.98 16 23 H 0.04 1.36 7.26 -2.38 -0.02 1.34 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.21 7.02 -2.39 -0.02 1.19 16 26 H 0.14 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.08 1.82 8.05 -2.39 -0.02 1.81 16 28 H 0.42 10.71 8.83 -92.71 -0.82 9.89 16 29 H 0.17 9.40 5.92 -2.91 -0.02 9.38 16 30 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 Total: -1.00 -76.84 269.83 4.54 -72.31 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.34 Total: 31.92 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.91 Total: -18.31 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -2.70 Total: -102.02 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.03 Total: -24.99 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -76.84 4.54 -72.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139709848.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.228 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds