Wall clock time and date at job start Sun Mar 29 2020 21:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50704 * 120.00519 * 2 1 4 4 C 1.33015 * 120.00089 * 180.02562 * 2 1 3 5 5 C 1.47075 * 119.99445 * 352.83885 * 4 2 1 6 6 O 1.21638 * 120.00248 * 354.00398 * 5 4 2 7 7 N 1.34781 * 119.99783 * 174.00519 * 5 4 2 8 8 C 1.40515 * 120.00007 * 179.97438 * 7 5 4 9 9 C 1.40672 * 126.08345 * 359.69574 * 8 7 5 10 10 N 1.30904 * 108.38274 * 179.87483 * 9 8 7 11 11 N 1.40071 * 108.41220 * 0.37976 * 10 9 8 12 12 C 1.37312 * 126.06408 * 179.75758 * 11 10 9 13 13 H 1.08003 * 120.00020 * 180.02562 * 12 11 10 14 14 C 1.38993 * 120.00055 * 359.97438 * 12 11 10 15 15 N 1.31292 * 120.00131 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99874 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47398 * 90.00220 * 16 14 12 18 18 H 1.48503 * 109.46905 * 210.00212 * 16 14 12 19 19 H 1.48503 * 109.47179 * 329.99835 * 16 14 12 20 20 C 1.35698 * 126.08416 * 180.02562 * 8 7 5 21 21 H 1.09006 * 109.46743 * 264.38820 * 1 2 3 22 22 H 1.09002 * 109.47019 * 24.38501 * 1 2 3 23 23 H 1.08999 * 109.47495 * 144.39068 * 1 2 3 24 24 H 1.09000 * 109.47483 * 240.00900 * 3 2 1 25 25 H 1.09003 * 109.46436 * 0.02562 * 3 2 1 26 26 H 1.08996 * 109.47184 * 119.99814 * 3 2 1 27 27 H 1.07996 * 120.00058 * 172.55983 * 4 2 1 28 28 H 0.97002 * 119.99752 * 0.02562 * 7 5 4 29 29 H 1.07995 * 125.80875 * 0.02562 * 9 8 7 30 30 H 0.97000 * 120.00031 * 180.02562 * 15 14 12 31 31 H 1.08000 * 126.24987 * 359.94609 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1519 -0.0005 5 6 1.4452 -2.4207 0.1577 6 8 0.2527 -2.4127 0.3978 7 7 2.1003 -3.5923 0.0366 8 6 1.4060 -4.8045 0.1883 9 6 0.0354 -4.9443 0.4725 10 7 -0.2448 -6.2214 0.5363 11 7 0.9323 -6.9447 0.3051 12 6 1.0515 -8.3125 0.2943 13 1 2.0117 -8.7694 0.1049 14 6 -0.0631 -9.1092 0.5282 15 7 -1.2302 -8.5539 0.7590 16 14 0.0993 -10.9701 0.5142 17 1 0.4203 -11.4494 1.8826 18 1 -1.1803 -11.5753 0.0653 19 1 1.1871 -11.3651 -0.4164 20 6 1.9397 -6.0485 0.0930 21 1 -0.3633 -0.1005 1.0228 22 1 -0.3633 0.9360 -0.4243 23 1 -0.3634 -0.8355 -0.5983 24 1 2.8871 1.3629 -0.8900 25 1 1.5522 2.1336 0.0005 26 1 2.8872 1.3628 0.8900 27 1 3.2452 -1.1558 -0.1216 28 1 3.0513 -3.5986 -0.1545 29 1 -0.6667 -4.1356 0.6116 30 1 -2.0080 -9.1099 0.9226 31 1 2.9727 -6.2861 -0.1136 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139748462.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:53 Heat of formation + Delta-G solvation = 37.235388 kcal Electronic energy + Delta-G solvation = -15796.270618 eV Core-core repulsion = 13079.172532 eV Total energy + Delta-G solvation = -2717.098086 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68752 -40.32635 -36.59959 -35.65589 -34.92138 -32.25311 -30.17187 -28.62833 -28.40710 -26.62842 -23.08269 -22.55528 -21.20726 -19.59858 -19.25213 -17.56435 -17.38283 -16.83670 -16.15532 -15.75426 -15.24316 -15.11817 -14.87392 -14.75500 -14.34922 -13.52188 -13.31170 -13.21673 -13.19011 -12.89758 -12.86439 -12.55353 -12.31529 -12.08168 -11.75805 -10.98405 -10.82000 -10.35169 -10.10866 -9.96855 -8.46919 -8.46495 -6.23414 0.45748 1.30453 1.39902 1.58064 1.74597 2.09101 2.14845 2.42603 2.73471 2.97155 3.09652 3.94080 4.00293 4.36677 4.43911 4.59237 4.66691 4.75549 4.85007 4.96458 5.00658 5.04352 5.17190 5.24334 5.31013 5.52233 5.62067 5.76239 5.96993 6.34519 6.74862 6.87023 7.45725 7.51881 7.70037 8.53095 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.082869 B = 0.004761 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.801867 B = 5879.168312 C = 6190.383385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.030 4.030 3 C -0.119 4.119 4 C -0.238 4.238 5 C 0.519 3.481 6 O -0.577 6.577 7 N -0.617 5.617 8 C -0.044 4.044 9 C -0.061 4.061 10 N -0.311 5.311 11 N -0.169 5.169 12 C -0.356 4.356 13 H 0.141 0.859 14 C -0.007 4.007 15 N -0.826 5.826 16 Si 1.021 2.979 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.244 1.244 20 C -0.084 4.084 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.418 0.582 29 H 0.167 0.833 30 H 0.276 0.724 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 12.245 -2.454 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.032 4.032 3 C -0.176 4.176 4 C -0.259 4.259 5 C 0.312 3.688 6 O -0.459 6.459 7 N -0.262 5.262 8 C -0.150 4.150 9 C -0.236 4.236 10 N -0.144 5.144 11 N 0.062 4.938 12 C -0.487 4.487 13 H 0.158 0.842 14 C -0.219 4.219 15 N -0.454 5.454 16 Si 0.840 3.160 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.167 1.167 20 C -0.234 4.234 21 H 0.082 0.918 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.178 0.822 28 H 0.255 0.745 29 H 0.184 0.816 30 H 0.086 0.914 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.483 11.349 -2.063 14.319 hybrid contribution 0.612 -0.282 -0.087 0.680 sum 9.096 11.067 -2.150 14.485 Atomic orbital electron populations 1.21129 0.92475 1.02260 1.02419 1.22866 0.96220 0.95873 0.88243 1.21046 1.00401 0.91980 1.04133 1.22343 1.01443 0.89818 1.12261 1.19341 0.86987 0.84975 0.77530 1.90639 1.17142 1.87591 1.50568 1.42435 1.12184 1.02406 1.69127 1.17411 0.92188 0.85935 1.19467 1.24169 0.95822 0.94755 1.08900 1.78126 1.06708 1.02763 1.26772 1.44834 1.04189 1.05694 1.39088 1.20640 0.99222 0.76961 1.51874 0.84160 1.26908 0.93710 1.07159 0.94082 1.70408 1.00455 1.38659 1.35905 0.84572 0.78909 0.72906 0.79655 1.18855 1.20186 1.16672 1.22003 0.96044 0.87943 1.17435 0.91790 0.90287 0.92337 0.88915 0.90185 0.89283 0.82218 0.74464 0.81577 0.91421 0.79545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.44 71.23 0.60 -2.72 16 2 C -0.03 -0.66 6.11 -17.61 -0.11 -0.76 16 3 C -0.12 -1.47 10.06 71.24 0.72 -0.75 16 4 C -0.24 -5.84 9.67 23.43 0.23 -5.61 16 5 C 0.52 18.86 7.58 86.56 0.66 19.52 16 6 O -0.58 -25.75 10.42 -4.15 -0.04 -25.79 16 7 N -0.62 -22.46 5.46 -307.18 -1.68 -24.13 16 8 C -0.04 -2.10 6.90 37.75 0.26 -1.84 16 9 C -0.06 -3.48 10.85 85.43 0.93 -2.55 16 10 N -0.31 -19.42 10.39 -56.46 -0.59 -20.01 16 11 N -0.17 -9.67 3.74 -190.00 -0.71 -10.38 16 12 C -0.36 -19.31 10.25 84.02 0.86 -18.45 16 13 H 0.14 6.58 7.83 -2.91 -0.02 6.55 16 14 C -0.01 -0.38 5.50 84.95 0.47 0.08 16 15 N -0.83 -48.78 11.81 21.66 0.26 -48.53 16 16 Si 1.02 39.24 29.55 68.60 2.03 41.27 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.24 -8.46 7.11 99.48 0.71 -7.76 16 20 C -0.08 -4.03 11.49 83.38 0.96 -3.07 16 21 H 0.06 1.85 8.04 -2.38 -0.02 1.83 16 22 H 0.08 1.56 7.94 -2.39 -0.02 1.54 16 23 H 0.06 1.96 6.14 -2.39 -0.01 1.95 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.82 7.87 -2.39 -0.02 0.80 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.42 11.15 8.81 -92.71 -0.82 10.34 16 29 H 0.17 9.53 5.91 -2.91 -0.02 9.51 16 30 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.19 7.05 8.06 -2.91 -0.02 7.03 16 Total: -1.00 -77.45 272.79 5.17 -72.28 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.34 Total: 31.46 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 5.57 Total: -16.16 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -2.72 Total: -103.05 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.04 Total: -25.79 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -77.45 5.17 -72.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139748462.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.515 kcal (2) G-P(sol) polarization free energy of solvation -77.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds