Wall clock time and date at job start Sun Mar 29 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31513 * 120.00408 * 196.28138 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48491 * 109.47206 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46960 * 299.99810 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21514 * 119.99845 * 359.97438 * 14 13 3 16 16 C 1.48131 * 119.99711 * 179.97438 * 14 13 3 17 17 C 1.40110 * 121.14380 * 179.71932 * 16 14 13 18 18 C 1.38504 * 117.82364 * 179.74299 * 17 16 14 19 19 N 1.31917 * 119.96625 * 0.54061 * 18 17 16 20 20 N 1.28271 * 122.51835 * 359.72232 * 19 18 17 21 21 C 1.31929 * 122.32552 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 23 23 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 24 24 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47166 * 240.00331 * 2 1 3 26 26 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 27 27 H 0.97001 * 119.99385 * 354.83951 * 8 7 5 28 28 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 29 29 H 1.08000 * 121.08844 * 359.97438 * 17 16 14 30 30 H 1.07996 * 120.01599 * 180.23474 * 18 17 16 31 31 H 1.08001 * 120.17001 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6859 -1.3141 9 14 3.1041 0.7977 -2.8498 10 1 3.9636 0.2945 -3.9512 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3367 2.6312 0.4577 16 6 0.0671 3.3177 2.6570 17 6 -1.1885 3.9192 2.8143 18 6 -1.4742 4.5096 4.0341 19 7 -0.5725 4.5023 4.9970 20 7 0.5807 3.9581 4.8576 21 6 0.9500 3.3643 3.7389 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.9549 0.8550 -0.5315 28 1 2.2901 2.1167 1.9977 29 1 -1.9114 3.9190 2.0119 30 1 -2.4328 4.9801 4.1953 31 1 1.9298 2.9169 3.6598 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185325811.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:13 Heat of formation + Delta-G solvation = 16.153187 kcal Electronic energy + Delta-G solvation = -16303.893318 eV Core-core repulsion = 13585.881039 eV Total energy + Delta-G solvation = -2718.012279 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20881 -39.22140 -35.53932 -33.45445 -32.94316 -32.34706 -31.31762 -27.54579 -25.37286 -24.58667 -22.46473 -21.21932 -19.87689 -18.53522 -17.62543 -17.25057 -16.35866 -15.60804 -15.28830 -15.01607 -14.59236 -13.90041 -13.55648 -13.36556 -12.72952 -12.63213 -12.43587 -11.89685 -11.13798 -11.03576 -10.83142 -10.54872 -10.32221 -10.29243 -10.19318 -9.98895 -9.69617 -9.45349 -9.16782 -8.44770 -8.33714 -6.67812 -4.33006 0.29103 0.72044 2.95245 3.30571 3.37597 3.44047 3.54945 3.66512 3.93257 4.24967 4.33201 4.43356 4.72733 4.82693 5.06963 5.14015 5.59043 5.69613 5.93689 5.95975 5.97694 6.13811 6.54088 6.66953 6.77077 6.88586 7.14352 7.23269 7.46748 8.11077 8.19826 8.47352 8.49819 8.71560 9.36622 10.73324 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039346 B = 0.006737 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.469620 B = 4155.302831 C = 4521.913068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.247 3.753 4 H 0.045 0.955 5 C -0.621 4.621 6 H 0.063 0.937 7 C 0.041 3.959 8 N -0.894 5.894 9 Si 1.039 2.961 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.686 5.686 14 C 0.545 3.455 15 O -0.534 6.534 16 C -0.121 4.121 17 C -0.065 4.065 18 C 0.035 3.965 19 N -0.237 5.237 20 N -0.244 5.244 21 C 0.068 3.932 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.270 0.730 28 H 0.394 0.606 29 H 0.162 0.838 30 H 0.178 0.822 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 3.738 6.854 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.144 3.856 4 H 0.063 0.937 5 C -0.659 4.659 6 H 0.081 0.919 7 C -0.166 4.166 8 N -0.527 5.527 9 Si 0.867 3.133 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.206 1.206 13 N -0.334 5.334 14 C 0.328 3.672 15 O -0.412 6.412 16 C -0.135 4.135 17 C -0.095 4.095 18 C -0.129 4.129 19 N -0.079 5.079 20 N -0.086 5.086 21 C -0.097 4.097 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.228 0.772 29 H 0.180 0.820 30 H 0.195 0.805 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.305 3.600 6.138 13.358 hybrid contribution -0.048 0.146 0.534 0.556 sum -11.353 3.746 6.672 13.691 Atomic orbital electron populations 1.21897 0.97381 0.99141 1.01812 1.22383 0.93795 0.99530 1.02219 1.19178 0.96176 0.88680 0.81568 0.93703 1.22063 0.89382 1.50054 1.04385 0.91888 1.25679 0.97539 0.92251 1.01153 1.70876 1.07033 1.40432 1.34354 0.84129 0.75544 0.77745 0.75928 1.20781 1.19441 1.20566 1.46260 1.13816 1.54741 1.18551 1.17904 0.83413 0.79714 0.86149 1.90760 1.50857 1.59690 1.39925 1.21591 0.95876 0.99339 0.96720 1.22636 0.96141 0.92033 0.98708 1.24352 1.00948 0.97266 0.90340 1.72864 0.97227 1.10566 1.27278 1.73048 1.09151 1.05592 1.20781 1.24626 1.00642 0.94828 0.89570 0.93548 0.92888 0.94813 0.90936 0.92856 0.91974 0.77182 0.82015 0.80517 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.15 0.32 -2.44 16 2 C -0.14 -2.96 5.28 -26.73 -0.14 -3.11 16 3 C 0.25 5.54 1.82 -69.08 -0.13 5.41 16 4 H 0.05 1.09 6.25 -51.93 -0.32 0.77 16 5 C -0.62 -15.97 9.01 -34.44 -0.31 -16.28 16 6 H 0.06 1.69 7.96 -52.49 -0.42 1.27 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.01 16 8 N -0.89 -25.82 13.70 55.43 0.76 -25.06 16 9 Si 1.04 24.08 26.27 -169.99 -4.47 19.61 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -5.76 5.67 56.52 0.32 -5.44 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.69 -12.79 4.99 -55.79 -0.28 -13.07 16 14 C 0.54 9.57 6.39 -12.20 -0.08 9.49 16 15 O -0.53 -10.71 13.63 5.35 0.07 -10.64 16 16 C -0.12 -1.71 5.92 -104.58 -0.62 -2.33 16 17 C -0.07 -0.77 9.77 -38.78 -0.38 -1.15 16 18 C 0.03 0.37 11.30 -17.42 -0.20 0.17 16 19 N -0.24 -3.22 11.48 30.53 0.35 -2.87 16 20 N -0.24 -3.54 11.49 30.78 0.35 -3.18 16 21 C 0.07 0.91 10.84 -16.95 -0.18 0.73 16 22 H 0.05 0.87 5.63 -51.93 -0.29 0.57 16 23 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.61 4.74 -51.93 -0.25 1.36 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.27 7.71 8.73 -40.82 -0.36 7.36 16 28 H 0.39 6.44 6.68 -40.82 -0.27 6.17 16 29 H 0.16 1.68 7.80 -52.49 -0.41 1.28 16 30 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.18 1.98 6.53 -52.49 -0.34 1.64 16 LS Contribution 262.16 15.07 3.95 3.95 Total: -1.00 -30.43 262.16 -4.29 -34.71 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.22 Total: 5.04 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.81 Total: -8.49 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 1.19 Total: -44.19 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -4.47 Total: 19.61 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.43 -4.29 -34.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185325811.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds