Wall clock time and date at job start Sun Mar 29 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31513 * 120.00408 * 196.28138 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48491 * 109.47206 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.46960 * 299.99810 * 9 7 5 12 12 H 1.48499 * 109.47283 * 59.99520 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21514 * 119.99845 * 359.97438 * 14 13 3 16 16 C 1.48131 * 119.99711 * 179.97438 * 14 13 3 17 17 C 1.40110 * 121.14380 * 179.71932 * 16 14 13 18 18 C 1.38504 * 117.82364 * 179.74299 * 17 16 14 19 19 N 1.31917 * 119.96625 * 0.54061 * 18 17 16 20 20 N 1.28271 * 122.51835 * 359.72232 * 19 18 17 21 21 C 1.31929 * 122.32552 * 359.97438 * 20 19 18 22 22 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 23 23 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 24 24 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47166 * 240.00331 * 2 1 3 26 26 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 27 27 H 0.97001 * 119.99385 * 354.83951 * 8 7 5 28 28 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 29 29 H 1.08000 * 121.08844 * 359.97438 * 17 16 14 30 30 H 1.07996 * 120.01599 * 180.23474 * 18 17 16 31 31 H 1.08001 * 120.17001 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6859 -1.3141 9 14 3.1041 0.7977 -2.8498 10 1 3.9636 0.2945 -3.9512 11 1 2.0024 -0.1666 -2.6010 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3367 2.6312 0.4577 16 6 0.0671 3.3177 2.6570 17 6 -1.1885 3.9192 2.8143 18 6 -1.4742 4.5096 4.0341 19 7 -0.5725 4.5023 4.9970 20 7 0.5807 3.9581 4.8576 21 6 0.9500 3.3643 3.7389 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.9549 0.8550 -0.5315 28 1 2.2901 2.1167 1.9977 29 1 -1.9114 3.9190 2.0119 30 1 -2.4328 4.9801 4.1953 31 1 1.9298 2.9169 3.6598 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185325811.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:13 Heat of formation + Delta-G solvation = -6.129207 kcal Electronic energy + Delta-G solvation = -16304.859555 eV Core-core repulsion = 13585.881039 eV Total energy + Delta-G solvation = -2718.978516 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27036 -40.63655 -37.20878 -34.78035 -34.32793 -33.79751 -32.76930 -29.29393 -26.58871 -25.59605 -24.25847 -22.65558 -21.47849 -20.19255 -18.86824 -18.65515 -17.38087 -17.18120 -16.62064 -16.20226 -15.80907 -15.48807 -14.97572 -14.56288 -14.48292 -14.37102 -14.07928 -13.64164 -12.70864 -12.51856 -12.31828 -12.09450 -11.81172 -11.56892 -11.37981 -11.29381 -11.23444 -11.09632 -10.71709 -10.49345 -9.95035 -8.80994 -6.46323 -0.77011 -0.21380 1.45913 1.51035 1.68714 1.71581 2.11753 2.41777 2.56124 2.99747 3.01235 3.23048 3.49713 3.56619 3.81505 4.28821 4.32957 4.38585 4.47593 4.59306 4.74476 4.83127 5.06766 5.10124 5.16606 5.25544 5.51424 5.52125 5.63800 5.99241 6.49591 6.62721 7.13248 7.31135 7.50658 8.59240 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039346 B = 0.006737 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.469620 B = 4155.302831 C = 4521.913068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.252 3.748 4 H 0.030 0.970 5 C -0.615 4.615 6 H 0.041 0.959 7 C -0.004 4.004 8 N -0.928 5.928 9 Si 1.069 2.931 10 H -0.285 1.285 11 H -0.240 1.240 12 H -0.272 1.272 13 N -0.691 5.691 14 C 0.551 3.449 15 O -0.558 6.558 16 C -0.138 4.138 17 C -0.052 4.052 18 C 0.051 3.949 19 N -0.257 5.257 20 N -0.268 5.268 21 C 0.071 3.929 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.258 0.742 28 H 0.404 0.596 29 H 0.180 0.820 30 H 0.224 0.776 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 4.060 7.289 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.048 0.952 5 C -0.653 4.653 6 H 0.060 0.940 7 C -0.205 4.205 8 N -0.563 5.563 9 Si 0.891 3.109 10 H -0.211 1.211 11 H -0.165 1.165 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.336 3.664 15 O -0.438 6.438 16 C -0.152 4.152 17 C -0.082 4.082 18 C -0.113 4.113 19 N -0.099 5.099 20 N -0.108 5.108 21 C -0.094 4.094 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.239 0.761 29 H 0.197 0.803 30 H 0.240 0.760 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.828 3.934 6.630 15.832 hybrid contribution 0.681 0.137 0.491 0.850 sum -13.147 4.070 7.121 15.496 Atomic orbital electron populations 1.21787 0.95396 1.00599 1.01486 1.22278 0.95491 0.98090 1.01847 1.18862 0.93688 0.89869 0.82847 0.95235 1.22271 0.91365 1.48353 1.03351 0.94030 1.26812 0.97670 0.92029 1.03985 1.70982 1.08112 1.43119 1.34050 0.83760 0.75279 0.78779 0.73063 1.21101 1.16487 1.19785 1.46058 1.14908 1.55232 1.17714 1.18215 0.82379 0.78801 0.86974 1.90741 1.51384 1.60535 1.41173 1.21298 0.97490 1.01094 0.95317 1.22950 0.95225 0.90387 0.99603 1.24994 1.01765 0.95778 0.88792 1.72793 0.97512 1.10932 1.28619 1.73033 1.10062 1.06515 1.21212 1.24748 1.01029 0.94527 0.89125 0.93404 0.93662 0.92438 0.91987 0.92589 0.93239 0.76067 0.80252 0.75984 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 8.53 71.98 0.61 -4.21 16 2 C -0.14 -5.63 5.28 30.59 0.16 -5.47 16 3 C 0.25 11.12 1.82 44.25 0.08 11.20 16 4 H 0.03 1.42 6.25 -2.39 -0.01 1.41 16 5 C -0.62 -31.99 9.01 25.60 0.23 -31.76 16 6 H 0.04 2.29 7.96 -2.91 -0.02 2.26 16 7 C 0.00 -0.22 5.32 84.66 0.45 0.23 16 8 N -0.93 -54.76 13.70 21.45 0.29 -54.47 16 9 Si 1.07 48.14 26.27 68.60 1.80 49.94 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.24 -9.70 5.67 99.48 0.56 -9.14 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.69 -25.22 4.99 -448.70 -2.24 -27.46 16 14 C 0.55 18.54 6.39 86.87 0.56 19.10 16 15 O -0.56 -21.44 13.63 -3.76 -0.05 -21.49 16 16 C -0.14 -3.64 5.92 -19.84 -0.12 -3.76 16 17 C -0.05 -1.06 9.77 22.79 0.22 -0.83 16 18 C 0.05 0.90 11.30 84.74 0.96 1.86 16 19 N -0.26 -6.36 11.48 -57.34 -0.66 -7.02 16 20 N -0.27 -7.34 11.49 -56.53 -0.65 -7.99 16 21 C 0.07 1.80 10.84 85.04 0.92 2.72 16 22 H 0.05 1.67 5.63 -2.39 -0.01 1.66 16 23 H 0.04 1.67 7.88 -2.38 -0.02 1.65 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.64 4.74 -2.39 -0.01 2.63 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.26 15.29 8.73 -92.71 -0.81 14.48 16 28 H 0.40 13.04 6.68 -92.71 -0.62 12.42 16 29 H 0.18 3.06 7.80 -2.91 -0.02 3.04 16 30 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.19 4.06 6.53 -2.91 -0.02 4.04 16 Total: -1.00 -65.58 262.16 2.94 -62.64 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.36 Total: 16.74 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.08 Total: -10.90 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -3.25 Total: -96.94 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.80 Total: 49.94 kcal Total: -65.58 2.94 -62.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185325811.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.513 kcal (2) G-P(sol) polarization free energy of solvation -65.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds