Wall clock time and date at job start Sun Mar 29 2020 21:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32164 * 119.89247 * 2 1 4 4 C 1.32052 * 120.07969 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.06703 * 179.97438 * 4 3 2 6 6 C 1.39543 * 119.86272 * 359.97438 * 4 3 2 7 7 C 1.47983 * 120.10449 * 179.97438 * 6 4 3 8 8 O 1.21568 * 120.00066 * 5.78459 * 7 6 4 9 9 N 1.34774 * 119.99922 * 185.78249 * 7 6 4 10 10 C 1.36775 * 120.00040 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00190 * 359.97438 * 10 9 7 12 12 C 1.39110 * 119.99946 * 180.02562 * 10 9 7 13 13 N 1.31318 * 120.00151 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99818 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47008 * 59.99988 * 14 12 10 16 16 H 1.48506 * 109.47064 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47190 * 299.99747 * 14 12 10 18 18 N 1.33072 * 119.78728 * 359.97438 * 6 4 3 19 19 C 1.31809 * 119.91326 * 359.71612 * 18 6 4 20 20 C 1.50708 * 119.92953 * 180.27245 * 19 18 6 21 21 H 1.09002 * 109.47087 * 90.00205 * 1 2 3 22 22 H 1.08999 * 109.46930 * 330.00466 * 1 2 3 23 23 H 1.09002 * 109.47543 * 210.00414 * 1 2 3 24 24 H 1.09002 * 109.46969 * 96.70859 * 5 4 3 25 25 H 1.08997 * 109.47553 * 216.71024 * 5 4 3 26 26 H 1.08998 * 109.47356 * 336.71392 * 5 4 3 27 27 H 0.96999 * 120.00080 * 359.97438 * 9 7 6 28 28 H 0.97006 * 120.00026 * 179.97438 * 13 12 10 29 29 H 1.08997 * 109.47097 * 270.28701 * 20 19 18 30 30 H 1.09005 * 109.46727 * 30.28607 * 20 19 18 31 31 H 1.08996 * 109.47014 * 150.28216 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1656 1.1458 0.0000 4 6 3.4862 1.1501 0.0005 5 6 4.2369 2.4568 -0.0001 6 6 4.1849 -0.0577 0.0016 7 6 5.6648 -0.0592 0.0016 8 8 6.2736 0.9878 0.1068 9 7 6.3375 -1.2211 -0.1150 10 6 7.7052 -1.2225 -0.1144 11 1 8.2462 -0.2924 -0.0210 12 6 8.3996 -2.4219 -0.2353 13 7 7.7419 -3.5527 -0.3494 14 14 10.2677 -2.4236 -0.2353 15 1 10.7632 -1.8492 1.0414 16 1 10.7613 -3.8172 -0.3751 17 1 10.7635 -1.6060 -1.3715 18 7 3.5163 -1.2083 0.0026 19 6 2.1982 -1.2025 0.0083 20 6 1.4406 -2.5053 0.0156 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3634 -0.8899 0.5139 24 1 4.5216 2.7127 1.0205 25 1 5.1325 2.3611 -0.6139 26 1 3.5997 3.2419 -0.4071 27 1 5.8517 -2.0566 -0.1985 28 1 8.2262 -4.3890 -0.4340 29 1 1.2580 -2.8253 -1.0102 30 1 2.0274 -3.2639 0.5338 31 1 0.4887 -2.3691 0.5287 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186021708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:59 Heat of formation + Delta-G solvation = -0.181357 kcal Electronic energy + Delta-G solvation = -16189.631996 eV Core-core repulsion = 13470.911398 eV Total energy + Delta-G solvation = -2718.720598 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87308 -38.00071 -34.78795 -34.10375 -33.66885 -31.43927 -29.71337 -28.63074 -26.20013 -24.67964 -23.10162 -21.56911 -19.70861 -18.11102 -17.73255 -16.10039 -15.32329 -14.93802 -14.76186 -14.01939 -13.74144 -13.64697 -13.03554 -12.95171 -12.68712 -12.62604 -12.26499 -11.87215 -11.76736 -11.59418 -11.58623 -11.18684 -11.08137 -10.53875 -10.39628 -10.36495 -9.64767 -8.95840 -8.44721 -8.23442 -8.10832 -6.65465 -3.94270 0.93510 1.50181 3.10590 3.16369 3.20422 3.58317 3.99116 4.27113 4.35460 4.43075 4.69125 4.88805 5.11473 5.20239 5.34501 5.45506 5.56689 5.63487 5.72987 5.86696 5.89110 6.06989 6.24476 6.26901 6.35973 6.64558 7.01125 7.32483 7.69656 7.84293 8.19460 8.45327 8.95531 9.36417 9.92514 10.49579 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035396 B = 0.006796 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.867050 B = 4118.899758 C = 4880.807535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.065 3.935 3 N -0.446 5.446 4 C 0.114 3.886 5 C -0.095 4.095 6 C 0.064 3.936 7 C 0.465 3.535 8 O -0.590 6.590 9 N -0.514 5.514 10 C -0.293 4.293 11 H 0.112 0.888 12 C 0.026 3.974 13 N -0.873 5.873 14 Si 0.939 3.061 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.269 1.269 18 N -0.423 5.423 19 C 0.068 3.932 20 C -0.099 4.099 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.404 0.596 28 H 0.279 0.721 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 1.630 0.087 11.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 N -0.161 5.161 4 C -0.028 4.028 5 C -0.152 4.152 6 C -0.077 4.077 7 C 0.252 3.748 8 O -0.478 6.478 9 N -0.146 5.146 10 C -0.424 4.424 11 H 0.129 0.871 12 C -0.180 4.180 13 N -0.511 5.511 14 Si 0.765 3.235 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.194 1.194 18 N -0.141 5.141 19 C -0.075 4.075 20 C -0.157 4.157 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.240 0.760 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.762 2.071 0.130 10.960 hybrid contribution 0.523 -0.707 -0.038 0.881 sum -10.239 1.364 0.092 10.330 Atomic orbital electron populations 1.20687 0.88347 1.03433 1.02991 1.22081 0.97891 0.89198 0.98491 1.68135 1.08291 1.28842 1.10847 1.22228 0.89327 0.96967 0.94254 1.20932 0.99921 0.90125 1.04246 1.22482 0.97133 0.89224 0.98869 1.17021 0.83835 0.85235 0.88723 1.90549 1.67491 1.30715 1.59032 1.41894 1.07232 1.08004 1.57466 1.19927 0.81119 0.95434 1.45870 0.87053 1.25521 1.01658 0.94496 0.96308 1.69612 1.37533 0.98491 1.45477 0.85782 0.80830 0.77467 0.79452 1.19435 1.20639 1.19429 1.68339 1.07935 1.29153 1.08644 1.22015 0.90619 0.96402 0.98420 1.20715 0.98973 0.92824 1.03183 0.90424 0.90639 0.90251 0.90373 0.87090 0.92362 0.76016 0.91064 0.90304 0.90182 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.79 36.00 0.35 -0.69 16 2 C 0.07 1.04 6.79 -82.28 -0.56 0.48 16 3 N -0.45 -8.21 10.34 -5.22 -0.05 -8.26 16 4 C 0.11 2.32 6.82 -82.01 -0.56 1.76 16 5 C -0.09 -1.75 8.88 36.01 0.32 -1.43 16 6 C 0.06 1.45 6.75 -82.85 -0.56 0.89 16 7 C 0.46 11.88 7.70 -12.27 -0.09 11.78 16 8 O -0.59 -15.79 12.91 5.31 0.07 -15.72 16 9 N -0.51 -13.72 5.26 -11.80 -0.06 -13.79 16 10 C -0.29 -8.06 9.68 -15.02 -0.15 -8.21 16 11 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 12 C 0.03 0.67 5.50 -17.45 -0.10 0.58 16 13 N -0.87 -23.32 13.05 55.50 0.72 -22.59 16 14 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 N -0.42 -8.84 9.65 -5.90 -0.06 -8.89 16 19 C 0.07 1.16 6.79 -82.42 -0.56 0.60 16 20 C -0.10 -1.20 9.78 36.01 0.35 -0.85 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 24 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.11 2.26 5.85 -51.93 -0.30 1.96 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.40 10.76 7.26 -40.82 -0.30 10.46 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.70 5.94 -51.93 -0.31 0.39 16 LS Contribution 269.83 15.07 4.07 4.07 Total: -1.00 -30.41 269.83 -5.15 -35.56 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -3.26 Total: 9.59 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.55 Total: 4.92 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.55 Total: -53.53 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.07 Total: -15.72 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.41 -5.15 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186021708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.379 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds