Wall clock time and date at job start Sun Mar 29 2020 21:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32164 * 119.89247 * 2 1 4 4 C 1.32052 * 120.07969 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.06703 * 179.97438 * 4 3 2 6 6 C 1.39543 * 119.86272 * 359.97438 * 4 3 2 7 7 C 1.47983 * 120.10449 * 179.97438 * 6 4 3 8 8 O 1.21568 * 120.00066 * 5.78459 * 7 6 4 9 9 N 1.34774 * 119.99922 * 185.78249 * 7 6 4 10 10 C 1.36775 * 120.00040 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00190 * 359.97438 * 10 9 7 12 12 C 1.39110 * 119.99946 * 180.02562 * 10 9 7 13 13 N 1.31318 * 120.00151 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99818 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47008 * 59.99988 * 14 12 10 16 16 H 1.48506 * 109.47064 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47190 * 299.99747 * 14 12 10 18 18 N 1.33072 * 119.78728 * 359.97438 * 6 4 3 19 19 C 1.31809 * 119.91326 * 359.71612 * 18 6 4 20 20 C 1.50708 * 119.92953 * 180.27245 * 19 18 6 21 21 H 1.09002 * 109.47087 * 90.00205 * 1 2 3 22 22 H 1.08999 * 109.46930 * 330.00466 * 1 2 3 23 23 H 1.09002 * 109.47543 * 210.00414 * 1 2 3 24 24 H 1.09002 * 109.46969 * 96.70859 * 5 4 3 25 25 H 1.08997 * 109.47553 * 216.71024 * 5 4 3 26 26 H 1.08998 * 109.47356 * 336.71392 * 5 4 3 27 27 H 0.96999 * 120.00080 * 359.97438 * 9 7 6 28 28 H 0.97006 * 120.00026 * 179.97438 * 13 12 10 29 29 H 1.08997 * 109.47097 * 270.28701 * 20 19 18 30 30 H 1.09005 * 109.46727 * 30.28607 * 20 19 18 31 31 H 1.08996 * 109.47014 * 150.28216 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1656 1.1458 0.0000 4 6 3.4862 1.1501 0.0005 5 6 4.2369 2.4568 -0.0001 6 6 4.1849 -0.0577 0.0016 7 6 5.6648 -0.0592 0.0016 8 8 6.2736 0.9878 0.1068 9 7 6.3375 -1.2211 -0.1150 10 6 7.7052 -1.2225 -0.1144 11 1 8.2462 -0.2924 -0.0210 12 6 8.3996 -2.4219 -0.2353 13 7 7.7419 -3.5527 -0.3494 14 14 10.2677 -2.4236 -0.2353 15 1 10.7632 -1.8492 1.0414 16 1 10.7613 -3.8172 -0.3751 17 1 10.7635 -1.6060 -1.3715 18 7 3.5163 -1.2083 0.0026 19 6 2.1982 -1.2025 0.0083 20 6 1.4406 -2.5053 0.0156 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3634 -0.8899 0.5139 24 1 4.5216 2.7127 1.0205 25 1 5.1325 2.3611 -0.6139 26 1 3.5997 3.2419 -0.4071 27 1 5.8517 -2.0566 -0.1985 28 1 8.2262 -4.3890 -0.4340 29 1 1.2580 -2.8253 -1.0102 30 1 2.0274 -3.2639 0.5338 31 1 0.4887 -2.3691 0.5287 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186021708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:59 Heat of formation + Delta-G solvation = -22.631312 kcal Electronic energy + Delta-G solvation = -16190.605499 eV Core-core repulsion = 13470.911398 eV Total energy + Delta-G solvation = -2719.694101 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.37884 -39.92792 -36.48372 -35.77484 -35.13703 -33.40165 -31.06837 -29.84079 -27.82238 -26.41386 -24.44865 -23.10366 -21.48989 -20.09879 -19.28033 -17.84199 -16.89210 -16.76235 -16.10077 -15.83177 -15.35659 -15.25486 -14.42138 -14.25469 -13.90381 -13.80364 -13.62830 -13.55027 -13.20614 -13.07864 -12.92510 -12.70515 -12.51606 -12.40756 -12.12252 -11.80931 -11.55410 -10.67919 -10.19052 -9.96577 -9.81722 -8.60102 -6.04194 -0.56193 0.02526 1.39509 1.40481 1.53222 1.90068 2.22374 2.66725 2.73601 3.03814 3.18468 3.22475 3.43287 3.83004 3.98217 4.27568 4.32765 4.59265 4.71312 4.74938 4.78699 4.85909 4.97126 5.03677 5.09522 5.27422 5.35711 5.56863 5.83814 6.21907 6.42888 6.72853 6.94744 7.37128 7.91785 8.56281 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035396 B = 0.006796 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.867050 B = 4118.899758 C = 4880.807535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.088 3.912 3 N -0.453 5.453 4 C 0.108 3.892 5 C -0.088 4.088 6 C 0.024 3.976 7 C 0.467 3.533 8 O -0.610 6.610 9 N -0.531 5.531 10 C -0.338 4.338 11 H 0.094 0.906 12 C -0.010 4.010 13 N -0.905 5.905 14 Si 1.007 2.993 15 H -0.266 1.266 16 H -0.267 1.267 17 H -0.266 1.266 18 N -0.445 5.445 19 C 0.062 3.938 20 C -0.097 4.097 21 H 0.103 0.897 22 H 0.084 0.916 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.401 0.599 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.051 1.293 0.078 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.055 4.055 3 N -0.168 5.168 4 C -0.032 4.032 5 C -0.145 4.145 6 C -0.115 4.115 7 C 0.255 3.745 8 O -0.498 6.498 9 N -0.164 5.164 10 C -0.468 4.468 11 H 0.112 0.888 12 C -0.212 4.212 13 N -0.543 5.543 14 Si 0.828 3.172 15 H -0.191 1.191 16 H -0.191 1.191 17 H -0.191 1.191 18 N -0.163 5.163 19 C -0.083 4.083 20 C -0.155 4.155 21 H 0.121 0.879 22 H 0.103 0.897 23 H 0.132 0.868 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.236 0.764 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.502 1.763 0.121 13.617 hybrid contribution 0.958 -0.539 -0.031 1.100 sum -12.543 1.224 0.090 12.603 Atomic orbital electron populations 1.20967 0.83636 1.05630 1.05138 1.23159 1.00665 0.88073 0.93639 1.68302 1.06989 1.29988 1.11557 1.22351 0.90360 0.96574 0.93892 1.20815 0.99358 0.90499 1.03864 1.22014 0.95469 0.90885 1.03166 1.17630 0.85564 0.84605 0.86732 1.90511 1.68926 1.31310 1.59082 1.41878 1.07095 1.08056 1.59328 1.19943 0.81836 0.95596 1.49424 0.88794 1.26389 1.06207 0.93585 0.95023 1.69681 1.39267 0.98989 1.46392 0.84798 0.74917 0.78047 0.79415 1.19131 1.19116 1.19065 1.68266 1.10242 1.28883 1.08885 1.22955 0.89402 0.99148 0.96795 1.20932 0.99835 0.89817 1.04868 0.87915 0.89716 0.86840 0.90403 0.89569 0.89575 0.76442 0.90535 0.88388 0.91074 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 9.79 71.23 0.70 -0.81 16 2 C 0.09 2.51 6.79 42.62 0.29 2.80 16 3 N -0.45 -15.68 10.34 -170.42 -1.76 -17.44 16 4 C 0.11 4.36 6.82 42.84 0.29 4.66 16 5 C -0.09 -3.28 8.88 71.24 0.63 -2.65 16 6 C 0.02 1.09 6.75 41.86 0.28 1.37 16 7 C 0.47 25.18 7.70 86.83 0.67 25.85 16 8 O -0.61 -34.49 12.91 -3.93 -0.05 -34.54 16 9 N -0.53 -30.02 5.26 -309.53 -1.63 -31.65 16 10 C -0.34 -19.67 9.68 84.13 0.81 -18.86 16 11 H 0.09 5.61 7.15 -2.91 -0.02 5.59 16 12 C -0.01 -0.52 5.50 84.98 0.47 -0.05 16 13 N -0.90 -49.75 13.05 21.69 0.28 -49.46 16 14 Si 1.01 42.21 29.55 68.60 2.03 44.23 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 N -0.45 -18.62 9.65 -172.56 -1.67 -20.29 16 19 C 0.06 1.94 6.79 42.68 0.29 2.23 16 20 C -0.10 -1.96 9.78 71.24 0.70 -1.27 16 21 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.11 1.07 5.93 -2.39 -0.01 1.05 16 24 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 25 H 0.09 3.67 5.85 -2.39 -0.01 3.65 16 26 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 27 H 0.40 22.57 7.26 -92.71 -0.67 21.90 16 28 H 0.28 14.41 8.31 -92.70 -0.77 13.64 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.12 1.40 5.94 -2.39 -0.01 1.39 16 Total: -1.00 -70.41 269.83 2.83 -67.58 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.50 Total: 28.29 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.13 Total: 13.27 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -4.77 Total: -118.84 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.05 Total: -34.54 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -70.41 2.83 -67.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186021708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.945 kcal (2) G-P(sol) polarization free energy of solvation -70.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds