Wall clock time and date at job start Sun Mar 29 2020 21:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31913 * 119.04330 * 2 1 4 4 C 1.32172 * 121.03327 * 179.97438 * 3 2 1 5 5 C 1.38799 * 119.15097 * 359.97438 * 4 3 2 6 6 C 1.39505 * 118.26187 * 0.24893 * 5 4 3 7 7 C 1.48450 * 120.55264 * 179.73085 * 6 5 4 8 8 O 1.21480 * 119.99662 * 352.92252 * 7 6 5 9 9 N 1.34770 * 120.00264 * 172.92557 * 7 6 5 10 10 C 1.46507 * 119.99720 * 2.28280 * 9 7 6 11 11 C 1.46497 * 120.00279 * 182.28614 * 9 7 6 12 12 C 1.50698 * 109.47349 * 89.99531 * 11 9 7 13 13 H 1.08002 * 119.99955 * 0.02562 * 12 11 9 14 14 C 1.37876 * 120.00439 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00424 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99644 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47447 * 89.99908 * 16 14 12 18 18 H 1.48508 * 109.47186 * 210.00176 * 16 14 12 19 19 H 1.48508 * 109.47218 * 329.99821 * 16 14 12 20 20 N 1.31555 * 119.03755 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46987 * 90.00039 * 1 2 3 22 22 H 1.08997 * 109.47554 * 210.00769 * 1 2 3 23 23 H 1.09007 * 109.46879 * 330.00577 * 1 2 3 24 24 H 1.08003 * 120.42655 * 180.02562 * 4 3 2 25 25 H 1.08000 * 120.87290 * 179.97438 * 5 4 3 26 26 H 1.08999 * 109.46822 * 83.84221 * 10 9 7 27 27 H 1.09005 * 109.46720 * 203.83889 * 10 9 7 28 28 H 1.08999 * 109.46933 * 323.83743 * 10 9 7 29 29 H 1.09005 * 109.47340 * 209.99736 * 11 9 7 30 30 H 1.09003 * 109.47087 * 329.99598 * 11 9 7 31 31 H 0.96998 * 120.00231 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1533 0.0000 4 6 3.4683 1.1991 0.0005 5 6 4.1861 0.0112 0.0016 6 6 3.4760 -1.1896 -0.0032 7 6 4.1923 -2.4899 -0.0084 8 8 5.3999 -2.5175 -0.1380 9 7 3.5030 -3.6396 0.1308 10 6 2.0421 -3.6095 0.2368 11 6 4.2145 -4.9194 0.1760 12 6 4.5633 -5.2500 1.6043 13 1 4.2827 -4.5746 2.3990 14 6 5.2407 -6.4148 1.8967 15 7 5.5447 -6.7036 3.1432 16 14 5.7268 -7.5826 0.5222 17 1 7.0747 -7.2186 0.0167 18 1 5.7516 -8.9741 1.0405 19 1 4.7402 -7.4839 -0.5834 20 7 2.1455 -1.1502 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5138 24 1 3.9826 2.1489 0.0009 25 1 5.2661 0.0162 0.0016 26 1 1.6062 -3.5699 -0.7614 27 1 1.6965 -4.5075 0.7489 28 1 1.7370 -2.7288 0.8019 29 1 3.5779 -5.7037 -0.2335 30 1 5.1283 -4.8481 -0.4140 31 1 6.0215 -7.5228 3.3488 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194151858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:28 Heat of formation + Delta-G solvation = 9.689136 kcal Electronic energy + Delta-G solvation = -16225.685675 eV Core-core repulsion = 13507.393093 eV Total energy + Delta-G solvation = -2718.292581 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.37045 -40.41724 -36.91113 -35.20347 -34.45650 -34.21700 -30.58990 -29.42220 -27.78116 -26.49678 -24.67905 -23.52180 -20.94975 -19.19511 -18.98418 -18.21908 -17.16427 -16.84162 -16.65072 -16.19357 -15.82327 -15.53497 -14.88777 -14.48583 -14.36537 -13.90734 -13.71469 -13.42701 -13.18912 -13.16699 -12.95589 -12.46843 -12.12913 -11.93496 -11.79338 -11.72956 -11.41089 -10.85975 -10.57643 -10.11132 -9.50037 -8.37087 -6.44034 -0.59927 -0.11334 1.32908 1.36828 1.45719 1.68230 1.99481 2.29480 2.70732 2.77306 2.96948 3.04143 3.44415 3.71995 4.00090 4.39031 4.47659 4.51754 4.64781 4.76016 4.78785 4.87288 4.90156 5.00524 5.16926 5.38388 5.42250 5.53073 5.76420 6.16834 6.44429 6.56693 6.87916 7.05021 7.22167 8.79877 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.042042 B = 0.006339 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.837903 B = 4416.307777 C = 4682.384554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.299 3.701 3 N -0.516 5.516 4 C 0.169 3.831 5 C -0.184 4.184 6 C 0.123 3.877 7 C 0.545 3.455 8 O -0.572 6.572 9 N -0.580 5.580 10 C 0.082 3.918 11 C 0.220 3.780 12 C -0.543 4.543 13 H 0.026 0.974 14 C 0.014 3.986 15 N -0.943 5.943 16 Si 0.950 3.050 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.238 1.238 20 N -0.497 5.497 21 H 0.104 0.896 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.221 0.779 25 H 0.162 0.838 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.558 13.880 -9.221 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.033 3.967 3 N -0.231 5.231 4 C 0.001 3.999 5 C -0.207 4.207 6 C -0.023 4.023 7 C 0.331 3.669 8 O -0.452 6.452 9 N -0.308 5.308 10 C -0.060 4.060 11 C 0.098 3.902 12 C -0.581 4.581 13 H 0.045 0.955 14 C -0.185 4.185 15 N -0.583 5.583 16 Si 0.772 3.228 17 H -0.198 1.198 18 H -0.198 1.198 19 H -0.161 1.161 20 N -0.215 5.215 21 H 0.122 0.878 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.237 0.763 25 H 0.180 0.820 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.876 13.642 -9.173 19.711 hybrid contribution 1.668 -0.850 0.149 1.878 sum -9.208 12.791 -9.024 18.161 Atomic orbital electron populations 1.20745 0.82542 1.05374 1.05331 1.24221 1.00067 0.82839 0.89578 1.68323 1.10899 1.30271 1.13606 1.23990 0.89029 0.99154 0.87715 1.23124 1.04299 0.92912 1.00413 1.21532 0.90804 0.94149 0.95860 1.18388 0.86318 0.84050 0.78120 1.90710 1.14859 1.87104 1.52523 1.47903 1.09421 1.06120 1.67388 1.22407 0.76787 1.03925 1.02897 1.19531 0.93258 0.81658 0.95712 1.21479 1.37876 1.06267 0.92483 0.95544 1.25861 0.94597 0.99558 0.98452 1.70040 1.41262 1.26499 1.20472 0.85682 0.79869 0.77753 0.79474 1.19786 1.19779 1.16080 1.68716 1.07899 1.30600 1.14313 0.87798 0.88727 0.88158 0.76303 0.82049 0.90935 0.91996 0.87748 0.92534 0.95501 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.31 71.24 0.73 -0.48 16 2 C 0.30 7.12 7.64 138.79 1.06 8.18 16 3 N -0.52 -11.72 10.32 -187.88 -1.94 -13.66 16 4 C 0.17 3.43 11.31 84.78 0.96 4.39 16 5 C -0.18 -5.06 9.72 22.71 0.22 -4.84 16 6 C 0.12 4.22 6.65 41.98 0.28 4.50 16 7 C 0.55 24.10 7.67 86.97 0.67 24.76 16 8 O -0.57 -29.18 16.01 -3.65 -0.06 -29.24 16 9 N -0.58 -25.67 2.86 -853.87 -2.44 -28.11 16 10 C 0.08 2.80 9.35 127.77 1.20 3.99 16 11 C 0.22 11.05 4.22 85.63 0.36 11.42 16 12 C -0.54 -32.60 9.94 25.60 0.25 -32.35 16 13 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 14 C 0.01 0.82 5.47 84.66 0.46 1.28 16 15 N -0.94 -59.91 13.96 21.45 0.30 -59.61 16 16 Si 0.95 44.35 27.47 68.60 1.88 46.24 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 20 N -0.50 -14.65 6.12 -177.08 -1.08 -15.74 16 21 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 25 H 0.16 4.28 7.75 -2.91 -0.02 4.26 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 2.13 8.03 -2.38 -0.02 2.12 16 28 H 0.10 3.41 5.25 -2.42 -0.01 3.40 16 29 H 0.06 2.59 7.13 -2.38 -0.02 2.57 16 30 H 0.03 1.42 6.82 -2.39 -0.02 1.40 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -77.33 271.74 3.94 -73.39 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.08 Total: 5.88 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 6.19 Total: 20.85 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.16 Total: -117.12 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.24 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.24 kcal Total: -77.33 3.94 -73.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194151858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.076 kcal (2) G-P(sol) polarization free energy of solvation -77.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds