Wall clock time and date at job start Sun Mar 29 2020 21:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31906 * 119.04011 * 2 1 4 4 C 1.32184 * 121.03411 * 180.02562 * 3 2 1 5 5 C 1.38806 * 119.14246 * 0.02562 * 4 3 2 6 6 C 1.39497 * 118.26641 * 359.97438 * 5 4 3 7 7 C 1.48447 * 120.54941 * 179.97438 * 6 5 4 8 8 O 1.21483 * 120.00273 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99975 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99910 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47129 * 324.99754 * 10 9 7 12 12 C 1.52997 * 109.47473 * 85.00011 * 10 9 7 13 13 C 1.50708 * 109.47008 * 205.00179 * 10 9 7 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00195 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99968 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46959 * 89.99935 * 17 15 13 19 19 H 1.48491 * 109.47193 * 210.00326 * 17 15 13 20 20 H 1.48498 * 109.47096 * 330.00479 * 17 15 13 21 21 N 1.31558 * 119.03809 * 180.27545 * 2 1 3 22 22 H 1.08997 * 109.46788 * 90.00106 * 1 2 3 23 23 H 1.09004 * 109.46887 * 210.00436 * 1 2 3 24 24 H 1.08996 * 109.46866 * 329.99845 * 1 2 3 25 25 H 1.08003 * 120.42728 * 180.02562 * 4 3 2 26 26 H 1.08005 * 120.86634 * 179.97438 * 5 4 3 27 27 H 0.96994 * 120.00115 * 0.02562 * 9 7 6 28 28 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 29 29 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 30 30 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 31 31 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1532 0.0000 4 6 3.4684 1.1992 -0.0005 5 6 4.1861 0.0111 -0.0016 6 6 3.4761 -1.1896 -0.0015 7 6 4.1924 -2.4898 -0.0032 8 8 5.4070 -2.5142 -0.0042 9 7 3.4953 -3.6433 -0.0037 10 6 4.2023 -4.9264 -0.0048 11 1 5.1147 -4.8380 -0.5946 12 6 4.5591 -5.3134 1.4317 13 6 3.3166 -5.9874 -0.6057 14 1 2.3260 -5.7316 -0.9517 15 6 3.7709 -7.2847 -0.7137 16 7 4.9769 -7.5963 -0.2919 17 14 2.6728 -8.6000 -1.4578 18 1 2.8986 -8.6618 -2.9242 19 1 2.9962 -9.9162 -0.8511 20 1 1.2506 -8.2674 -1.1896 21 7 2.1456 -1.1502 -0.0055 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 3.9826 2.1490 -0.0001 26 1 5.2662 0.0162 -0.0024 27 1 2.5256 -3.6239 -0.0033 28 1 3.6467 -5.4018 2.0215 29 1 5.1997 -4.5460 1.8663 30 1 5.0848 -6.2684 1.4309 31 1 5.2964 -8.5091 -0.3675 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194637725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:33 Heat of formation + Delta-G solvation = -16.596540 kcal Electronic energy + Delta-G solvation = -15952.288520 eV Core-core repulsion = 13232.856107 eV Total energy + Delta-G solvation = -2719.432414 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.28061 -40.38967 -36.87537 -35.10283 -34.23740 -34.20668 -30.95388 -29.44164 -27.39712 -26.67100 -24.27180 -22.92263 -21.49028 -19.75822 -18.68995 -17.92153 -17.13384 -16.63147 -16.53142 -16.22892 -15.75563 -15.57291 -14.80826 -14.45960 -14.34653 -13.79255 -13.46701 -13.20505 -13.03821 -12.92936 -12.80126 -12.30922 -12.16162 -12.03708 -11.91830 -11.41003 -11.16922 -10.63751 -10.57870 -10.38261 -9.89563 -8.20342 -6.38071 -0.60147 -0.10723 1.44848 1.45319 1.56493 1.72056 2.10088 2.42521 2.73573 2.83108 3.04750 3.10242 3.62874 3.76314 4.00557 4.41140 4.52132 4.69103 4.75226 4.86164 4.87626 5.01784 5.02279 5.33624 5.36795 5.49859 5.60360 5.73645 5.85957 6.03312 6.66072 6.71159 6.94482 7.18614 7.36535 8.86196 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.006000 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.532173 B = 4665.235662 C = 5251.215803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.303 3.697 3 N -0.515 5.515 4 C 0.167 3.833 5 C -0.182 4.182 6 C 0.121 3.879 7 C 0.549 3.451 8 O -0.575 6.575 9 N -0.679 5.679 10 C 0.267 3.733 11 H 0.007 0.993 12 C -0.134 4.134 13 C -0.550 4.550 14 H 0.070 0.930 15 C 0.017 3.983 16 N -0.915 5.915 17 Si 0.974 3.026 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.261 1.261 21 N -0.513 5.513 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.223 0.777 26 H 0.167 0.833 27 H 0.409 0.591 28 H 0.039 0.961 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 15.298 0.886 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.036 3.964 3 N -0.230 5.230 4 C 0.000 4.000 5 C -0.205 4.205 6 C -0.025 4.025 7 C 0.333 3.667 8 O -0.455 6.455 9 N -0.326 5.326 10 C 0.164 3.836 11 H 0.025 0.975 12 C -0.192 4.192 13 C -0.588 4.588 14 H 0.088 0.912 15 C -0.183 4.183 16 N -0.553 5.553 17 Si 0.799 3.201 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.186 1.186 21 N -0.231 5.231 22 H 0.118 0.882 23 H 0.109 0.891 24 H 0.122 0.878 25 H 0.239 0.761 26 H 0.185 0.815 27 H 0.245 0.755 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.955 15.016 0.904 17.017 hybrid contribution 0.601 -1.006 -0.321 1.216 sum -7.354 14.009 0.583 15.833 Atomic orbital electron populations 1.20729 0.82826 1.05328 1.05162 1.23992 0.99845 0.82604 0.89926 1.68334 1.11099 1.29960 1.13604 1.24050 0.88938 0.99350 0.87708 1.23171 1.04454 0.92757 1.00100 1.21608 0.90516 0.94484 0.95931 1.18378 0.86608 0.84160 0.77581 1.90716 1.14296 1.87584 1.52902 1.46264 1.11183 1.05748 1.69415 1.18545 0.92122 0.79082 0.93862 0.97499 1.21904 0.99302 1.01068 0.96970 1.21486 1.01742 0.93743 1.41876 0.91154 1.25779 0.96565 1.00630 0.95319 1.70032 1.18395 1.20303 1.46575 0.85309 0.79074 0.77571 0.78186 1.20258 1.20630 1.18557 1.68201 1.08542 1.32344 1.14006 0.88175 0.89067 0.87771 0.76065 0.81543 0.75465 0.94163 0.96575 0.90896 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.31 71.24 0.73 -0.66 16 2 C 0.30 7.68 7.64 138.79 1.06 8.74 16 3 N -0.51 -11.90 10.32 -187.86 -1.94 -13.84 16 4 C 0.17 3.32 11.31 84.78 0.96 4.28 16 5 C -0.18 -4.81 9.72 22.71 0.22 -4.59 16 6 C 0.12 4.14 6.79 41.98 0.29 4.43 16 7 C 0.55 23.75 7.79 86.96 0.68 24.43 16 8 O -0.57 -28.32 16.09 -3.66 -0.06 -28.38 16 9 N -0.68 -30.73 5.06 -448.38 -2.27 -33.00 16 10 C 0.27 14.23 2.56 44.25 0.11 14.34 16 11 H 0.01 0.44 7.58 -2.39 -0.02 0.42 16 12 C -0.13 -6.89 9.26 71.98 0.67 -6.22 16 13 C -0.55 -29.83 8.73 25.60 0.22 -29.61 16 14 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 15 C 0.02 0.95 5.30 84.65 0.45 1.39 16 16 N -0.92 -52.37 11.32 21.44 0.24 -52.13 16 17 Si 0.97 42.26 29.54 68.60 2.03 44.28 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 N -0.51 -16.07 9.60 -177.09 -1.70 -17.77 16 22 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 26 H 0.17 4.09 7.74 -2.91 -0.02 4.07 16 27 H 0.41 16.93 7.92 -92.71 -0.73 16.19 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 4.05 6.07 -2.38 -0.01 4.04 16 31 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -67.89 276.79 2.11 -65.78 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.42 Total: 18.53 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.39 Total: 16.53 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -5.67 Total: -116.74 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.06 Total: -28.38 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -67.89 2.11 -65.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194637725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.180 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds