Wall clock time and date at job start Sun Mar 29 2020 21:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31906 * 119.04154 * 2 1 4 4 C 1.32174 * 121.03418 * 180.02562 * 3 2 1 5 5 C 1.38801 * 119.14969 * 0.02562 * 4 3 2 6 6 C 1.39502 * 118.26177 * 359.97438 * 5 4 3 7 7 C 1.48446 * 120.54847 * 179.97438 * 6 5 4 8 8 O 1.21475 * 120.00280 * 0.03095 * 7 6 5 9 9 N 1.34781 * 119.99744 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99713 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47140 * 34.99823 * 10 9 7 12 12 C 1.53004 * 109.46955 * 274.99776 * 10 9 7 13 13 C 1.50702 * 109.46607 * 154.99979 * 10 9 7 14 14 H 1.07996 * 120.00669 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99681 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00172 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00221 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47283 * 59.99681 * 17 15 13 19 19 H 1.48500 * 109.47405 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.46871 * 300.00079 * 17 15 13 21 21 N 1.31555 * 119.04090 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47218 * 89.99905 * 1 2 3 23 23 H 1.09005 * 109.47417 * 209.99229 * 1 2 3 24 24 H 1.08997 * 109.47584 * 329.99739 * 1 2 3 25 25 H 1.08005 * 120.42796 * 179.72366 * 4 3 2 26 26 H 1.07996 * 120.87031 * 179.97438 * 5 4 3 27 27 H 0.96994 * 119.99991 * 0.02562 * 9 7 6 28 28 H 1.08998 * 109.46669 * 180.02562 * 12 10 9 29 29 H 1.08998 * 109.47107 * 300.00529 * 12 10 9 30 30 H 1.08995 * 109.46837 * 60.00099 * 12 10 9 31 31 H 0.97002 * 120.00112 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1532 0.0000 4 6 3.4682 1.1992 -0.0005 5 6 4.1861 0.0112 -0.0016 6 6 3.4760 -1.1896 -0.0015 7 6 4.1924 -2.4898 -0.0032 8 8 5.4069 -2.5141 -0.0041 9 7 3.4953 -3.6433 -0.0037 10 6 4.2023 -4.9264 -0.0048 11 1 5.1152 -4.8388 0.5843 12 6 4.5580 -5.3115 -1.4423 13 6 3.3171 -5.9881 0.5953 14 1 2.3268 -5.7329 0.9424 15 6 3.7711 -7.2858 0.7003 16 7 4.9765 -7.5971 0.2763 17 14 2.6737 -8.6021 1.4436 18 1 1.4300 -8.7210 0.6408 19 1 3.3904 -9.9027 1.4426 20 1 2.3284 -8.2288 2.8389 21 7 2.1456 -1.1502 -0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8901 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 3.9825 2.1489 -0.0050 26 1 5.2660 0.0163 -0.0024 27 1 2.5256 -3.6239 -0.0033 28 1 5.0836 -6.2664 -1.4431 29 1 3.6451 -5.3991 -2.0314 30 1 5.1981 -4.5435 -1.8763 31 1 5.2958 -8.5101 0.3498 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194637740.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:36 Heat of formation + Delta-G solvation = 5.121872 kcal Electronic energy + Delta-G solvation = -15951.373310 eV Core-core repulsion = 13232.882678 eV Total energy + Delta-G solvation = -2718.490633 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.13395 -38.71864 -34.95075 -33.87730 -33.18157 -32.31654 -29.01769 -28.52315 -25.44729 -25.19722 -23.13026 -21.26385 -19.71900 -18.17058 -17.50176 -16.14083 -15.44331 -15.30105 -15.22598 -14.75213 -14.25909 -14.04510 -13.40262 -13.10821 -12.66263 -12.49129 -12.42059 -11.76003 -11.13684 -11.00090 -10.96344 -10.85258 -10.69981 -10.37754 -10.25196 -9.81273 -9.50450 -9.14751 -9.05965 -8.57946 -8.00965 -6.14120 -4.23491 0.62449 0.90937 3.16831 3.26206 3.30950 3.32469 3.59908 3.88816 3.98247 4.08273 4.34360 4.81729 4.98069 5.08029 5.18494 5.40149 5.42002 5.45299 5.80507 5.84478 6.31030 6.77553 6.83885 6.92185 7.08605 7.33189 7.49616 7.66312 7.84964 7.98375 8.10019 8.56330 8.70579 8.96892 9.43454 10.91959 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.006000 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.481653 B = 4665.255421 C = 5251.274901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.311 3.689 3 N -0.515 5.515 4 C 0.148 3.852 5 C -0.184 4.184 6 C 0.148 3.852 7 C 0.550 3.450 8 O -0.540 6.540 9 N -0.677 5.677 10 C 0.261 3.739 11 H 0.052 0.948 12 C -0.147 4.147 13 C -0.535 4.535 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 N -0.494 5.494 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.174 0.826 26 H 0.159 0.841 27 H 0.401 0.599 28 H 0.093 0.907 29 H 0.028 0.972 30 H 0.015 0.985 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 13.756 -1.067 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.231 5.231 4 C -0.019 4.019 5 C -0.207 4.207 6 C 0.000 4.000 7 C 0.331 3.669 8 O -0.418 6.418 9 N -0.324 5.324 10 C 0.160 3.840 11 H 0.070 0.930 12 C -0.206 4.206 13 C -0.573 4.573 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 N -0.211 5.211 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.191 0.809 26 H 0.177 0.823 27 H 0.235 0.765 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.118 13.455 -1.083 14.820 hybrid contribution 0.010 -0.662 0.348 0.748 sum -6.108 12.793 -0.734 14.195 Atomic orbital electron populations 1.20574 0.85433 1.04281 1.03958 1.23255 0.98279 0.83160 0.90965 1.68171 1.10460 1.30507 1.13930 1.23281 0.89475 0.98541 0.90599 1.22980 1.03933 0.93070 1.00691 1.22172 0.89591 0.95789 0.92482 1.17831 0.86822 0.83044 0.79186 1.90751 1.12670 1.86722 1.51662 1.46505 1.10933 1.06352 1.68613 1.18902 0.93454 0.77321 0.94343 0.93044 1.22086 0.99183 1.02264 0.97064 1.21164 1.01399 0.93147 1.41609 0.91907 1.24881 0.95246 0.98403 0.95100 1.69889 1.16745 1.19767 1.45735 0.86468 0.80324 0.80401 0.79684 1.20079 1.21102 1.20146 1.68261 1.09090 1.30805 1.12945 0.89577 0.89313 0.89682 0.80917 0.82286 0.76463 0.88858 0.95249 0.96575 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.31 36.00 0.37 -0.45 16 2 C 0.31 4.28 7.64 -157.31 -1.20 3.08 16 3 N -0.52 -6.78 10.32 -10.74 -0.11 -6.89 16 4 C 0.15 1.73 11.31 -17.20 -0.19 1.53 16 5 C -0.18 -2.58 9.72 -38.90 -0.38 -2.96 16 6 C 0.15 2.56 6.79 -82.64 -0.56 1.99 16 7 C 0.55 11.59 7.79 -12.05 -0.09 11.50 16 8 O -0.54 -12.83 16.09 5.39 0.09 -12.74 16 9 N -0.68 -14.94 5.06 -55.68 -0.28 -15.22 16 10 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 11 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 12 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 13 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -24.79 11.32 55.43 0.63 -24.17 16 17 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 N -0.49 -7.97 9.60 -7.33 -0.07 -8.04 16 22 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 26 H 0.16 2.05 7.74 -52.49 -0.41 1.65 16 27 H 0.40 8.16 7.92 -40.82 -0.32 7.84 16 28 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -30.78 276.78 -6.40 -37.18 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.52 Total: 5.05 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.29 Total: 5.00 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.16 Total: -54.31 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.78 -6.40 -37.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194637740.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds