Wall clock time and date at job start Sun Mar 29 2020 22:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.46684 * 2 1 4 4 C 1.50690 * 109.47136 * 119.99917 * 2 1 3 5 5 H 1.07999 * 120.00302 * 120.00228 * 4 2 1 6 6 C 1.37875 * 120.00241 * 300.00311 * 4 2 1 7 7 N 1.31513 * 120.00091 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47226 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47004 * 120.00074 * 8 6 4 11 11 H 1.48507 * 109.46989 * 239.99949 * 8 6 4 12 12 N 1.46499 * 109.47255 * 240.00252 * 2 1 3 13 13 C 1.34781 * 120.00078 * 84.99819 * 12 2 1 14 14 O 1.21586 * 120.00052 * 0.02562 * 13 12 2 15 15 N 1.34770 * 120.00028 * 180.02562 * 13 12 2 16 16 C 1.39400 * 120.00192 * 185.09554 * 15 13 12 17 17 C 1.39040 * 119.69952 * 174.91041 * 16 15 13 18 18 C 1.38347 * 119.10220 * 179.97438 * 17 16 15 19 19 C 1.38849 * 118.49792 * 0.02562 * 18 17 16 20 20 C 1.38064 * 119.30734 * 0.24865 * 19 18 17 21 21 N 1.31943 * 120.85121 * 359.48151 * 20 19 18 22 22 H 1.08997 * 109.47552 * 300.00089 * 1 2 3 23 23 H 1.09003 * 109.47326 * 60.00324 * 1 2 3 24 24 H 1.08999 * 109.46994 * 179.97438 * 1 2 3 25 25 H 0.96998 * 120.00097 * 179.97438 * 7 6 4 26 26 H 0.96993 * 119.99985 * 264.99426 * 12 2 1 27 27 H 0.96996 * 120.00434 * 5.09194 * 15 13 12 28 28 H 1.08000 * 120.44921 * 359.94828 * 17 16 15 29 29 H 1.08003 * 120.75102 * 180.02562 * 18 17 16 30 30 H 1.07997 * 120.34307 * 179.97438 * 19 18 17 31 31 H 1.07999 * 119.56899 * 179.73007 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4826 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2862 3.6037 10 1 3.1472 -0.1857 4.8160 11 1 1.1677 -1.5867 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3572 14 8 1.8583 1.1617 -2.4116 15 7 2.5958 -0.6535 -3.4577 16 6 2.8301 0.0637 -4.6299 17 6 3.3927 -0.5765 -5.7284 18 6 3.6193 0.1470 -6.8856 19 6 3.2745 1.4919 -6.9043 20 6 2.7247 2.0643 -5.7747 21 7 2.5153 1.3480 -4.6866 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1613 3.4844 26 1 2.2491 -1.6316 -1.1526 27 1 2.7559 -1.6099 -3.4342 28 1 3.6497 -1.6243 -5.6789 29 1 4.0546 -0.3236 -7.7548 30 1 3.4388 2.0849 -7.7918 31 1 2.4590 3.1111 -5.7831 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194734722.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:34 Heat of formation + Delta-G solvation = -4.445856 kcal Electronic energy + Delta-G solvation = -15935.745265 eV Core-core repulsion = 13216.839744 eV Total energy + Delta-G solvation = -2718.905520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70772 -40.19439 -36.92476 -35.73272 -34.30750 -33.23455 -31.47372 -29.98119 -27.33976 -24.98327 -24.30015 -22.81298 -21.49535 -19.86682 -19.05716 -17.90992 -17.10114 -16.85551 -16.53032 -16.45338 -15.75717 -15.14952 -15.04805 -14.73811 -14.36729 -13.84302 -13.72924 -12.97615 -12.91100 -12.79624 -12.72909 -12.28478 -12.10559 -11.75110 -11.32710 -11.08944 -10.73835 -10.61156 -9.95513 -9.80725 -9.11323 -8.16923 -6.34620 0.25604 0.52414 1.45640 1.45987 1.58124 1.68082 2.27350 2.42464 3.08015 3.13690 3.28175 3.78211 4.04077 4.23750 4.31485 4.46549 4.73519 4.87326 4.92765 5.07460 5.11061 5.34131 5.39115 5.43104 5.59570 5.66406 5.81792 5.98391 6.09080 6.14928 6.73528 7.04543 7.33760 7.45917 7.78186 8.90161 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.059210 B = 0.005011 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.779968 B = 5586.732229 C = 5805.373654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.289 3.711 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.716 5.716 13 C 0.681 3.319 14 O -0.590 6.590 15 N -0.662 5.662 16 C 0.347 3.653 17 C -0.204 4.204 18 C -0.044 4.044 19 C -0.201 4.201 20 C 0.103 3.897 21 N -0.535 5.535 22 H 0.067 0.933 23 H 0.007 0.993 24 H 0.042 0.958 25 H 0.266 0.734 26 H 0.403 0.597 27 H 0.429 0.571 28 H 0.168 0.832 29 H 0.180 0.820 30 H 0.167 0.833 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -6.705 -17.675 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.185 3.815 3 H 0.013 0.987 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.370 5.370 13 C 0.380 3.620 14 O -0.465 6.465 15 N -0.312 5.312 16 C 0.116 3.884 17 C -0.227 4.227 18 C -0.070 4.070 19 C -0.223 4.223 20 C -0.054 4.054 21 N -0.251 5.251 22 H 0.086 0.914 23 H 0.026 0.974 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.238 0.762 27 H 0.268 0.732 28 H 0.186 0.814 29 H 0.197 0.803 30 H 0.185 0.815 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.367 -5.154 -16.703 18.286 hybrid contribution 0.419 -1.043 0.506 1.232 sum 5.787 -6.196 -16.198 18.282 Atomic orbital electron populations 1.21910 0.98454 0.99443 0.99359 1.18239 0.90873 0.91579 0.80801 0.98697 1.21552 1.32591 1.13601 0.90543 0.90623 1.25838 0.94863 0.95592 1.02409 1.70075 1.37058 1.23988 1.24595 0.85230 0.78065 0.78449 0.78145 1.18211 1.21055 1.20354 1.45467 1.69372 1.13953 1.08230 1.16438 0.79080 0.85300 0.81154 1.90960 1.55382 1.15928 1.84268 1.42644 1.68090 1.12204 1.08298 1.18716 0.94111 0.89165 0.86451 1.21783 1.05096 1.03169 0.92672 1.21861 0.94068 0.93453 0.97622 1.22386 1.02641 0.97027 1.00219 1.23010 0.94389 1.00183 0.87864 1.67576 1.20438 1.07125 1.29932 0.91393 0.97388 0.93917 0.92525 0.76205 0.73154 0.81418 0.80298 0.81514 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.02 9.26 71.98 0.67 -6.36 16 2 C 0.29 15.60 2.56 44.24 0.11 15.72 16 3 H 0.00 -0.31 7.58 -2.38 -0.02 -0.33 16 4 C -0.54 -29.30 8.73 25.60 0.22 -29.07 16 5 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 8 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 9 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 12 N -0.72 -31.19 5.07 -461.42 -2.34 -33.53 16 13 C 0.68 30.22 8.49 179.05 1.52 31.74 16 14 O -0.59 -32.54 14.27 -3.99 -0.06 -32.59 16 15 N -0.66 -21.38 5.39 -322.20 -1.74 -23.12 16 16 C 0.35 11.05 7.42 132.92 0.99 12.04 16 17 C -0.20 -4.13 9.94 22.49 0.22 -3.91 16 18 C -0.04 -0.70 10.17 22.44 0.23 -0.47 16 19 C -0.20 -3.73 10.11 22.37 0.23 -3.50 16 20 C 0.10 2.88 11.17 84.63 0.95 3.83 16 21 N -0.54 -20.38 7.89 -193.04 -1.52 -21.90 16 22 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.40 14.22 8.56 -92.71 -0.79 13.43 16 27 H 0.43 9.47 8.72 -92.71 -0.81 8.66 16 28 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 30 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -78.78 273.43 1.75 -77.03 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.44 Total: 22.09 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 5.58 Total: 21.16 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -5.36 Total: -132.03 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.06 Total: -32.59 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -78.78 1.75 -77.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734722.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.579 kcal (2) G-P(sol) polarization free energy of solvation -78.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds