Wall clock time and date at job start Sun Mar 29 2020 22:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47695 * 2 1 4 4 C 1.50702 * 109.47409 * 239.99491 * 2 1 3 5 5 H 1.07993 * 120.00460 * 240.00700 * 4 2 1 6 6 C 1.37877 * 119.99580 * 59.99790 * 4 2 1 7 7 N 1.31516 * 120.00060 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47069 * 60.00275 * 8 6 4 10 10 H 1.48502 * 109.47090 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47368 * 300.00411 * 8 6 4 12 12 N 1.46504 * 109.46961 * 119.99788 * 2 1 3 13 13 C 1.34780 * 120.00058 * 274.99399 * 12 2 1 14 14 O 1.21585 * 119.99931 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99977 * 180.02562 * 13 12 2 16 16 C 1.39972 * 119.99937 * 185.30556 * 15 13 12 17 17 C 1.39277 * 120.48548 * 32.79159 * 16 15 13 18 18 C 1.38510 * 118.35542 * 180.21789 * 17 16 15 19 19 C 1.38263 * 119.24067 * 359.52699 * 18 17 16 20 20 N 1.31861 * 120.91386 * 0.25676 * 19 18 17 21 21 C 1.31814 * 121.79780 * 359.97438 * 20 19 18 22 22 H 1.08994 * 109.47056 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46651 * 300.00647 * 1 2 3 24 24 H 1.08997 * 109.46887 * 60.00023 * 1 2 3 25 25 H 0.96998 * 120.00032 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99692 * 95.00501 * 12 2 1 27 27 H 0.97001 * 119.99978 * 5.30150 * 15 13 12 28 28 H 1.07994 * 120.82037 * 0.02562 * 17 16 15 29 29 H 1.08004 * 120.38071 * 179.80193 * 18 17 16 30 30 H 1.08002 * 119.54445 * 180.22864 * 19 18 17 31 31 H 1.08000 * 119.67247 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5204 -4.0075 10 1 1.8269 -0.4202 -5.2204 11 1 3.8063 -1.1212 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8576 1.1615 2.4118 15 7 2.5968 -0.6533 3.4575 16 6 2.6258 0.0135 4.6878 17 6 1.6608 0.9692 4.9964 18 6 1.7341 1.6054 6.2246 19 6 2.7484 1.2668 7.1011 20 7 3.6442 0.3540 6.7804 21 6 3.6137 -0.2719 5.6207 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7095 1.1616 -3.4844 26 1 2.2490 -1.6318 1.1527 27 1 2.9004 -1.5726 3.3968 28 1 0.8767 1.2106 4.2941 29 1 1.0047 2.3542 6.4963 30 1 2.8080 1.7571 8.0615 31 1 4.3647 -1.0142 5.3938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194734907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:43 Heat of formation + Delta-G solvation = 5.725444 kcal Electronic energy + Delta-G solvation = -15924.825462 eV Core-core repulsion = 13206.361003 eV Total energy + Delta-G solvation = -2718.464460 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55121 -39.00381 -35.41069 -34.38404 -32.56830 -31.93302 -30.06605 -28.33389 -25.30956 -23.78602 -23.24402 -21.26055 -19.94139 -18.38746 -17.58580 -16.75565 -16.11635 -15.74603 -15.07007 -14.64621 -14.25381 -13.89244 -13.74694 -13.32130 -12.91025 -12.45524 -12.07822 -11.82325 -11.18748 -11.05141 -10.86037 -10.63739 -10.35609 -10.28144 -9.83079 -9.59357 -9.21833 -9.11882 -8.61520 -8.26909 -7.87788 -6.17293 -4.26968 1.16873 1.41332 3.03907 3.22721 3.28430 3.30027 3.61172 4.01813 4.28051 4.53375 4.80306 4.96275 5.05165 5.15494 5.21819 5.47264 5.64918 6.15871 6.30143 6.42476 6.72309 6.90090 6.95273 7.02853 7.13934 7.36280 7.56175 7.75272 7.91547 8.00766 8.09106 8.64341 8.76482 9.12298 9.41030 10.88764 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.061538 B = 0.004973 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.893370 B = 5628.586344 C = 5908.491412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.716 5.716 13 C 0.692 3.308 14 O -0.582 6.582 15 N -0.692 5.692 16 C 0.136 3.864 17 C -0.083 4.083 18 C -0.150 4.150 19 C 0.063 3.937 20 N -0.468 5.468 21 C 0.061 3.939 22 H 0.026 0.974 23 H 0.015 0.985 24 H 0.091 0.909 25 H 0.266 0.734 26 H 0.387 0.613 27 H 0.405 0.595 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.153 0.847 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 -3.503 13.199 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.367 5.367 13 C 0.392 3.608 14 O -0.459 6.459 15 N -0.340 5.340 16 C 0.037 3.963 17 C -0.111 4.111 18 C -0.170 4.170 19 C -0.095 4.095 20 N -0.176 5.176 21 C -0.100 4.100 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.220 0.780 27 H 0.240 0.760 28 H 0.166 0.834 29 H 0.153 0.847 30 H 0.170 0.830 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.864 -2.508 13.524 13.881 hybrid contribution -0.120 -1.120 -1.602 1.958 sum 1.744 -3.628 11.922 12.583 Atomic orbital electron populations 1.22103 0.98427 0.99152 1.00958 1.18715 0.90909 0.93790 0.78795 0.93227 1.21156 1.32723 1.13362 0.90222 0.92080 1.24877 0.94754 0.94947 0.99052 1.69889 1.35677 1.22328 1.24109 0.86477 0.79169 0.79554 0.81709 1.20140 1.21079 1.20161 1.45896 1.68190 1.13321 1.09288 1.16184 0.78845 0.85375 0.80391 1.90890 1.56767 1.14095 1.84186 1.42821 1.68752 1.16417 1.05992 1.18636 0.95109 0.96204 0.86369 1.21759 0.97766 0.95327 0.96288 1.22062 1.00140 1.00679 0.94161 1.22589 0.91827 0.95286 0.99804 1.67575 1.25010 1.07237 1.17792 1.22493 0.96271 1.00957 0.90246 0.95445 0.96630 0.89022 0.92427 0.78034 0.75952 0.83355 0.84737 0.82996 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.28 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.47 11.32 55.43 0.63 -23.85 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.72 -14.37 5.07 -59.81 -0.30 -14.67 16 13 C 0.69 13.57 8.29 -86.92 -0.72 12.85 16 14 O -0.58 -13.68 13.70 5.29 0.07 -13.60 16 15 N -0.69 -10.20 5.36 -14.12 -0.08 -10.27 16 16 C 0.14 2.01 6.31 -83.53 -0.53 1.48 16 17 C -0.08 -1.26 8.77 -39.10 -0.34 -1.61 16 18 C -0.15 -1.86 10.10 -39.47 -0.40 -2.26 16 19 C 0.06 0.76 11.18 -17.53 -0.20 0.56 16 20 N -0.47 -6.38 10.35 -13.09 -0.14 -6.52 16 21 C 0.06 0.80 11.12 -17.34 -0.19 0.61 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 25 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.39 6.55 8.56 -40.82 -0.35 6.20 16 27 H 0.41 4.44 8.84 -40.82 -0.36 4.08 16 28 H 0.15 2.55 6.48 -52.49 -0.34 2.21 16 29 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 272.32 15.07 4.10 4.10 Total: -1.00 -31.06 272.32 -6.75 -37.82 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -3.41 Total: 9.07 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.61 Total: 2.66 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.11 Total: -55.31 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.06 -6.75 -37.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.541 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds