Wall clock time and date at job start Sun Mar 29 2020 22:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47695 * 2 1 4 4 C 1.50702 * 109.47409 * 239.99491 * 2 1 3 5 5 H 1.07993 * 120.00460 * 240.00700 * 4 2 1 6 6 C 1.37877 * 119.99580 * 59.99790 * 4 2 1 7 7 N 1.31516 * 120.00060 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47069 * 60.00275 * 8 6 4 10 10 H 1.48502 * 109.47090 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47368 * 300.00411 * 8 6 4 12 12 N 1.46504 * 109.46961 * 119.99788 * 2 1 3 13 13 C 1.34780 * 120.00058 * 274.99399 * 12 2 1 14 14 O 1.21585 * 119.99931 * 0.02562 * 13 12 2 15 15 N 1.34772 * 119.99977 * 180.02562 * 13 12 2 16 16 C 1.39972 * 119.99937 * 185.30556 * 15 13 12 17 17 C 1.39277 * 120.48548 * 32.79159 * 16 15 13 18 18 C 1.38510 * 118.35542 * 180.21789 * 17 16 15 19 19 C 1.38263 * 119.24067 * 359.52699 * 18 17 16 20 20 N 1.31861 * 120.91386 * 0.25676 * 19 18 17 21 21 C 1.31814 * 121.79780 * 359.97438 * 20 19 18 22 22 H 1.08994 * 109.47056 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46651 * 300.00647 * 1 2 3 24 24 H 1.08997 * 109.46887 * 60.00023 * 1 2 3 25 25 H 0.96998 * 120.00032 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99692 * 95.00501 * 12 2 1 27 27 H 0.97001 * 119.99978 * 5.30150 * 15 13 12 28 28 H 1.07994 * 120.82037 * 0.02562 * 17 16 15 29 29 H 1.08004 * 120.38071 * 179.80193 * 18 17 16 30 30 H 1.08002 * 119.54445 * 180.22864 * 19 18 17 31 31 H 1.08000 * 119.67247 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5204 -4.0075 10 1 1.8269 -0.4202 -5.2204 11 1 3.8063 -1.1212 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8576 1.1615 2.4118 15 7 2.5968 -0.6533 3.4575 16 6 2.6258 0.0135 4.6878 17 6 1.6608 0.9692 4.9964 18 6 1.7341 1.6054 6.2246 19 6 2.7484 1.2668 7.1011 20 7 3.6442 0.3540 6.7804 21 6 3.6137 -0.2719 5.6207 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7095 1.1616 -3.4844 26 1 2.2490 -1.6318 1.1527 27 1 2.9004 -1.5726 3.3968 28 1 0.8767 1.2106 4.2941 29 1 1.0047 2.3542 6.4963 30 1 2.8080 1.7571 8.0615 31 1 4.3647 -1.0142 5.3938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194734907.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:42 Heat of formation + Delta-G solvation = -16.714916 kcal Electronic energy + Delta-G solvation = -15925.798549 eV Core-core repulsion = 13206.361003 eV Total energy + Delta-G solvation = -2719.437547 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.81533 -40.34974 -37.07454 -35.91934 -34.40183 -33.03754 -31.52962 -29.90480 -27.33968 -24.98248 -24.39369 -22.87702 -21.61970 -19.93352 -18.90651 -17.92919 -17.72713 -17.02996 -16.86338 -16.19107 -15.79252 -15.22218 -14.90370 -14.73793 -14.39349 -14.06954 -13.74068 -13.10717 -12.98221 -12.88591 -12.73299 -12.28591 -12.16315 -11.93126 -11.39549 -11.12792 -10.65885 -10.60296 -10.37545 -9.90645 -9.18385 -8.17744 -6.35192 0.13361 0.31642 1.46053 1.48260 1.55680 1.68770 2.12852 2.42240 2.92373 3.13116 3.35552 3.66789 3.92810 4.01990 4.17117 4.40424 4.71611 4.73256 4.91978 5.07899 5.10499 5.23393 5.29132 5.40165 5.57933 5.63028 5.79949 5.86673 6.08217 6.20143 6.72017 6.99271 7.17560 7.33362 7.61426 8.88568 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.061538 B = 0.004973 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.893370 B = 5628.586344 C = 5908.491412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H 0.000 1.000 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.711 5.711 13 C 0.693 3.307 14 O -0.625 6.625 15 N -0.670 5.670 16 C 0.111 3.889 17 C -0.106 4.106 18 C -0.147 4.147 19 C 0.070 3.930 20 N -0.482 5.482 21 C 0.070 3.930 22 H 0.041 0.959 23 H 0.012 0.988 24 H 0.067 0.933 25 H 0.266 0.734 26 H 0.405 0.595 27 H 0.425 0.575 28 H 0.121 0.879 29 H 0.161 0.839 30 H 0.189 0.811 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -4.979 14.309 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.364 5.364 13 C 0.393 3.607 14 O -0.506 6.506 15 N -0.320 5.320 16 C 0.013 3.987 17 C -0.135 4.135 18 C -0.167 4.167 19 C -0.087 4.087 20 N -0.191 5.191 21 C -0.090 4.090 22 H 0.060 0.940 23 H 0.031 0.969 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.241 0.759 27 H 0.264 0.736 28 H 0.139 0.861 29 H 0.178 0.822 30 H 0.206 0.794 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.954 -4.048 14.693 15.524 hybrid contribution -0.450 -0.596 -1.797 1.946 sum 2.505 -4.644 12.896 13.934 Atomic orbital electron populations 1.21917 0.98249 0.99506 0.99608 1.18279 0.90993 0.91696 0.80616 0.98243 1.21500 1.32784 1.13716 0.90614 0.90663 1.25785 0.94832 0.95564 1.02289 1.70044 1.36890 1.23858 1.24733 0.85376 0.78597 0.78703 0.77520 1.18806 1.21282 1.19640 1.45458 1.68494 1.13989 1.08413 1.16255 0.78536 0.84839 0.81076 1.90865 1.58498 1.16222 1.85001 1.42398 1.67744 1.17098 1.04768 1.18822 0.96196 0.97121 0.86529 1.21764 0.97853 0.96632 0.97259 1.22340 1.00819 1.00598 0.92974 1.23194 0.90546 0.94212 1.00778 1.67691 1.25628 1.07912 1.17854 1.22855 0.95866 1.00851 0.89463 0.94032 0.96895 0.91398 0.92506 0.75947 0.73616 0.86107 0.82183 0.79442 0.80157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.00 16 2 C 0.29 14.65 2.56 44.24 0.11 14.77 16 3 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 4 C -0.55 -28.31 8.73 25.60 0.22 -28.08 16 5 H 0.08 3.59 7.74 -2.91 -0.02 3.56 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -51.90 11.32 21.45 0.24 -51.65 16 8 Si 0.97 41.16 29.54 68.60 2.03 43.18 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 12 N -0.71 -28.56 5.07 -461.41 -2.34 -30.90 16 13 C 0.69 27.46 8.29 179.05 1.48 28.94 16 14 O -0.63 -30.51 13.70 -3.98 -0.05 -30.56 16 15 N -0.67 -19.21 5.36 -316.87 -1.70 -20.91 16 16 C 0.11 3.19 6.31 38.24 0.24 3.43 16 17 C -0.11 -3.25 8.77 22.58 0.20 -3.05 16 18 C -0.15 -3.42 10.10 22.34 0.23 -3.19 16 19 C 0.07 1.49 11.18 84.69 0.95 2.43 16 20 N -0.48 -11.87 10.35 -195.33 -2.02 -13.89 16 21 C 0.07 1.68 11.12 84.84 0.94 2.62 16 22 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 25 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.41 13.21 8.56 -92.71 -0.79 12.41 16 27 H 0.42 8.52 8.84 -92.71 -0.82 7.70 16 28 H 0.12 4.36 6.48 -2.91 -0.02 4.34 16 29 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -68.46 272.32 1.20 -67.26 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.45 Total: 24.33 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.49 Total: 13.14 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -5.82 Total: -117.35 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -68.46 1.20 -67.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194734907.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.545 kcal (2) G-P(sol) polarization free energy of solvation -68.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds